miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23239 5' -52.8 NC_005259.1 + 42589 0.66 0.877718
Target:  5'- aGGCGUgagCGAGCagucgacaucgGCGGucaUGAGC-CCg -3'
miRNA:   3'- -UCGCAaa-GCUCG-----------CGCCug-ACUUGuGG- -5'
23239 5' -52.8 NC_005259.1 + 44018 1.13 0.001296
Target:  5'- gAGCGUUUCGAGCGCGGACUGAACACCg -3'
miRNA:   3'- -UCGCAAAGCUCGCGCCUGACUUGUGG- -5'
23239 5' -52.8 NC_005259.1 + 44300 0.66 0.899534
Target:  5'- gAGCGggUugcccucuuugaCGAGCGUG--UUGAGCGCCg -3'
miRNA:   3'- -UCGCaaA------------GCUCGCGCcuGACUUGUGG- -5'
23239 5' -52.8 NC_005259.1 + 47057 0.68 0.789846
Target:  5'- gAGCGUguuggUGAGCGa-GGC-GAGCGCCg -3'
miRNA:   3'- -UCGCAaa---GCUCGCgcCUGaCUUGUGG- -5'
23239 5' -52.8 NC_005259.1 + 47486 0.66 0.877718
Target:  5'- cGCGUcacCGAgGCGCGGcagGAACACg -3'
miRNA:   3'- uCGCAaa-GCU-CGCGCCugaCUUGUGg -5'
23239 5' -52.8 NC_005259.1 + 48595 0.75 0.422897
Target:  5'- gAGCuugUCGAGCGCGGGCgcuacCGCCg -3'
miRNA:   3'- -UCGcaaAGCUCGCGCCUGacuu-GUGG- -5'
23239 5' -52.8 NC_005259.1 + 50238 0.67 0.84515
Target:  5'- gAGCG---CGGGCGCGGAUc-GugGCCa -3'
miRNA:   3'- -UCGCaaaGCUCGCGCCUGacUugUGG- -5'
23239 5' -52.8 NC_005259.1 + 53413 0.66 0.877718
Target:  5'- gGGCGguucugCGuAGCGCGacuuacgcaGACUGAGCagguGCCa -3'
miRNA:   3'- -UCGCaaa---GC-UCGCGC---------CUGACUUG----UGG- -5'
23239 5' -52.8 NC_005259.1 + 54200 0.68 0.81837
Target:  5'- aGGCGg--CG-GCccuugaCGGGCUGGAUACCg -3'
miRNA:   3'- -UCGCaaaGCuCGc-----GCCUGACUUGUGG- -5'
23239 5' -52.8 NC_005259.1 + 55835 0.72 0.598416
Target:  5'- cGCGUccUCGAcgcGUGUGGACUGAACcguggugaacucGCCg -3'
miRNA:   3'- uCGCAa-AGCU---CGCGCCUGACUUG------------UGG- -5'
23239 5' -52.8 NC_005259.1 + 60251 0.67 0.853645
Target:  5'- uGCGUg-CGGGUGCaaGGCUGGcCACCa -3'
miRNA:   3'- uCGCAaaGCUCGCGc-CUGACUuGUGG- -5'
23239 5' -52.8 NC_005259.1 + 62835 0.69 0.749585
Target:  5'- cGCGaggUCGAGCGCGcgguuGAC-GAGCAgCCg -3'
miRNA:   3'- uCGCaa-AGCUCGCGC-----CUGaCUUGU-GG- -5'
23239 5' -52.8 NC_005259.1 + 63836 0.7 0.675005
Target:  5'- cAGCGUUUCGAggcaaGCGCGuaccGGCgaGGugGCCg -3'
miRNA:   3'- -UCGCAAAGCU-----CGCGC----CUGa-CUugUGG- -5'
23239 5' -52.8 NC_005259.1 + 67593 0.7 0.718106
Target:  5'- cGCG--UCGGGCGCGaGACguguucGAGcCACCg -3'
miRNA:   3'- uCGCaaAGCUCGCGC-CUGa-----CUU-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.