miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23240 3' -57.5 NC_005259.1 + 34228 0.66 0.65267
Target:  5'- -cGGCGCu-GCCgGUcuUGCCGuuGAACg -3'
miRNA:   3'- ccUUGCGcuCGGgCA--ACGGCggCUUG- -5'
23240 3' -57.5 NC_005259.1 + 35491 0.68 0.547223
Target:  5'- cGAACGauccuGGGuuggcCCCGUUGCCGCCGc-- -3'
miRNA:   3'- cCUUGCg----CUC-----GGGCAACGGCGGCuug -5'
23240 3' -57.5 NC_005259.1 + 36120 0.67 0.610221
Target:  5'- uGAGCGUaAGCa-GUuggGCCGCCGGGCu -3'
miRNA:   3'- cCUUGCGcUCGggCAa--CGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 36237 0.66 0.67277
Target:  5'- uGGccAGCGCGAGCgCC--UGCgucggcagcgccaCGCCGGACa -3'
miRNA:   3'- -CC--UUGCGCUCG-GGcaACG-------------GCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 36761 0.73 0.312101
Target:  5'- uGAGCGUGAcguuagGCgCGUUGCCGCCGucCu -3'
miRNA:   3'- cCUUGCGCU------CGgGCAACGGCGGCuuG- -5'
23240 3' -57.5 NC_005259.1 + 36954 0.69 0.476595
Target:  5'- gGGGugccCGCGAgaccgccucgGCCCGca-CCGCCGAACg -3'
miRNA:   3'- -CCUu---GCGCU----------CGGGCaacGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 37193 0.68 0.526645
Target:  5'- cGAGCuGCG-GCCC-UUGCCGCCa--- -3'
miRNA:   3'- cCUUG-CGCuCGGGcAACGGCGGcuug -5'
23240 3' -57.5 NC_005259.1 + 37228 0.8 0.108248
Target:  5'- cGGGGCGCuGGCCCGUgccggauuggcUGCCGCCGuuGCc -3'
miRNA:   3'- -CCUUGCGcUCGGGCA-----------ACGGCGGCu-UG- -5'
23240 3' -57.5 NC_005259.1 + 38933 0.68 0.557608
Target:  5'- cGGuguUGCuGuGCCCGgugccgcUGCCGCCGAGa -3'
miRNA:   3'- -CCuu-GCG-CuCGGGCa------ACGGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 39146 0.66 0.663261
Target:  5'- -cGAUGUGAucGCCgaCGUUGaaaCCGCCGAACa -3'
miRNA:   3'- ccUUGCGCU--CGG--GCAAC---GGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 40314 0.71 0.384357
Target:  5'- cGAcacuCGUGAGCUCGaaaaGCUGCCGGACa -3'
miRNA:   3'- cCUu---GCGCUCGGGCaa--CGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 40557 0.66 0.67277
Target:  5'- -cGACGCGcGCCCGcgcggugUUGCUGUCGGcgGCu -3'
miRNA:   3'- ccUUGCGCuCGGGC-------AACGGCGGCU--UG- -5'
23240 3' -57.5 NC_005259.1 + 41311 0.66 0.646306
Target:  5'- uGAGCGCGAGgUcgaccucgaaaagggCGgUGCCGUCGGAUa -3'
miRNA:   3'- cCUUGCGCUCgG---------------GCaACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 41467 0.75 0.226683
Target:  5'- aGAA-GCG-GCCCGUgacGCCGUCGAGCa -3'
miRNA:   3'- cCUUgCGCuCGGGCAa--CGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 42808 0.66 0.692742
Target:  5'- -cGGCGCGuGCaCUGUgguauugcugccGCCGCCGAAa -3'
miRNA:   3'- ccUUGCGCuCG-GGCAa-----------CGGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 42968 0.67 0.631444
Target:  5'- cGAACGgGAuGCCggggaucauCGUUGCCgccccGCCGAACn -3'
miRNA:   3'- cCUUGCgCU-CGG---------GCAACGG-----CGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 43009 0.71 0.384357
Target:  5'- aGGGACGaGAacaaaCCGgcgaUGCCGCCGAGCa -3'
miRNA:   3'- -CCUUGCgCUcg---GGCa---ACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 43075 1.12 0.000534
Target:  5'- aGGAACGCGAGCCCGUUGCCGCCGAACa -3'
miRNA:   3'- -CCUUGCGCUCGGGCAACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 43202 0.67 0.610221
Target:  5'- cGGcGAUGuCGAcGCCCGccUGacCCGCCGAGCu -3'
miRNA:   3'- -CC-UUGC-GCU-CGGGCa-AC--GGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 43730 0.76 0.2047
Target:  5'- cGAugGCG-GCCa--UGCCGCCGAGCc -3'
miRNA:   3'- cCUugCGCuCGGgcaACGGCGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.