miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23240 3' -57.5 NC_005259.1 + 19544 0.71 0.375802
Target:  5'- aGGccGACGCGuauGCCCGcaGCCGUCGGGa -3'
miRNA:   3'- -CC--UUGCGCu--CGGGCaaCGGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 19692 0.66 0.65267
Target:  5'- cGGGAU-CGAGCaggcucgcaCGUuggcUGCCGCCGAGg -3'
miRNA:   3'- -CCUUGcGCUCGg--------GCA----ACGGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 20296 0.68 0.557608
Target:  5'- ---cCGCGAGUUCug-GUCGCCGAGCu -3'
miRNA:   3'- ccuuGCGCUCGGGcaaCGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 21190 0.66 0.673825
Target:  5'- -cGGCGCGAGCaCCaagcUGCaagguGCCGAGCu -3'
miRNA:   3'- ccUUGCGCUCG-GGca--ACGg----CGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 21454 0.67 0.631444
Target:  5'- aGAACGCu-GCCCGUgagGCUuugaaGCCGAuccGCg -3'
miRNA:   3'- cCUUGCGcuCGGGCAa--CGG-----CGGCU---UG- -5'
23240 3' -57.5 NC_005259.1 + 22044 0.69 0.476595
Target:  5'- aGAAcCGCGAGCCCGUccucaugGUCGCUcaccgugguGAGCu -3'
miRNA:   3'- cCUU-GCGCUCGGGCAa------CGGCGG---------CUUG- -5'
23240 3' -57.5 NC_005259.1 + 23286 0.7 0.451515
Target:  5'- cGGGCGCGgugguuggguaucggGGUCCGgcgcggucggUGUCGCCGAGCc -3'
miRNA:   3'- cCUUGCGC---------------UCGGGCa---------ACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 23877 0.66 0.663261
Target:  5'- uGGAUGCGcuaUCCGcUGCCGcCCGAGCc -3'
miRNA:   3'- cCUUGCGCuc-GGGCaACGGC-GGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 24667 0.76 0.203128
Target:  5'- cGAGCGCGA-CCCGUUcGCCauccucgugcacguGCCGAGCg -3'
miRNA:   3'- cCUUGCGCUcGGGCAA-CGG--------------CGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 25436 0.73 0.28346
Target:  5'- aGGAAUGCGAGCCguaUGagGUCGgCGAGCg -3'
miRNA:   3'- -CCUUGCGCUCGG---GCaaCGGCgGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 25906 0.66 0.673825
Target:  5'- aGGAugGCcgccuGAG-CCGccGCCGCCGGu- -3'
miRNA:   3'- -CCUugCG-----CUCgGGCaaCGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 26128 0.69 0.49635
Target:  5'- cGGu-CGCcGGUCCGacGCCGCCGAGg -3'
miRNA:   3'- -CCuuGCGcUCGGGCaaCGGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 26377 0.83 0.067736
Target:  5'- cGGugGCGAGCCUGUUGCucgcgauuccgaCGCCGGGCg -3'
miRNA:   3'- cCUugCGCUCGGGCAACG------------GCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 26443 0.67 0.589067
Target:  5'- cGAGCggGCGGGCCgGUggGCCGauguggaaCGAGCa -3'
miRNA:   3'- cCUUG--CGCUCGGgCAa-CGGCg-------GCUUG- -5'
23240 3' -57.5 NC_005259.1 + 26493 0.68 0.526645
Target:  5'- cGGAAcgcCGCGAGCUC---GCCGCCcGGCg -3'
miRNA:   3'- -CCUU---GCGCUCGGGcaaCGGCGGcUUG- -5'
23240 3' -57.5 NC_005259.1 + 26557 0.7 0.419842
Target:  5'- --cAC-CGAGgCUGUaGCCGCCGAGCa -3'
miRNA:   3'- ccuUGcGCUCgGGCAaCGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 27722 0.69 0.476595
Target:  5'- uGGAACGCGuacuuguucgcGCCCGcUGCUGCCc--- -3'
miRNA:   3'- -CCUUGCGCu----------CGGGCaACGGCGGcuug -5'
23240 3' -57.5 NC_005259.1 + 29061 0.67 0.589067
Target:  5'- cGAGCGCGguaucGGCCCGaucugcgcUGCCaagGCCGggUg -3'
miRNA:   3'- cCUUGCGC-----UCGGGCa-------ACGG---CGGCuuG- -5'
23240 3' -57.5 NC_005259.1 + 30697 0.7 0.429018
Target:  5'- aGGcAGCaCGAGCgugUUGUUGCCGCCGAcGCg -3'
miRNA:   3'- -CC-UUGcGCUCG---GGCAACGGCGGCU-UG- -5'
23240 3' -57.5 NC_005259.1 + 31403 0.67 0.599631
Target:  5'- cGGAGCacaGCGc-CCCGaggucGCCGCUGAGCa -3'
miRNA:   3'- -CCUUG---CGCucGGGCaa---CGGCGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.