miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23240 3' -57.5 NC_005259.1 + 1810 0.67 0.594346
Target:  5'- uGGccGACGCGAGCaaucccgCCGaccugcucgccgcUGCCGCCGAGg -3'
miRNA:   3'- -CC--UUGCGCUCG-------GGCa------------ACGGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 3996 0.66 0.694834
Target:  5'- cGAugGCGGGCCgCGUcccCCgGuuGAGCa -3'
miRNA:   3'- cCUugCGCUCGG-GCAac-GG-CggCUUG- -5'
23240 3' -57.5 NC_005259.1 + 5427 0.68 0.535871
Target:  5'- --cACGuCGAggucugcGCCCGcUGCCGCCGAc- -3'
miRNA:   3'- ccuUGC-GCU-------CGGGCaACGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 6051 0.71 0.364042
Target:  5'- ---cCGaCGAGCUCGUgugcgcggugaucGCCGCCGAACa -3'
miRNA:   3'- ccuuGC-GCUCGGGCAa------------CGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 6105 0.66 0.684352
Target:  5'- aGAuCGcCGAGgCCGagGCCGCCGcuACg -3'
miRNA:   3'- cCUuGC-GCUCgGGCaaCGGCGGCu-UG- -5'
23240 3' -57.5 NC_005259.1 + 6350 0.71 0.400964
Target:  5'- cGGGgugccguACGUGcGCaCGUUGUCGCCGGGCg -3'
miRNA:   3'- -CCU-------UGCGCuCGgGCAACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 8425 0.67 0.620828
Target:  5'- cGAGCauGCGAuGCUCGUUGCCGgUGGu- -3'
miRNA:   3'- cCUUG--CGCU-CGGGCAACGGCgGCUug -5'
23240 3' -57.5 NC_005259.1 + 8665 0.66 0.65267
Target:  5'- cGGGcugccACGCGGGCaaCGggGCCGCCu--- -3'
miRNA:   3'- -CCU-----UGCGCUCGg-GCaaCGGCGGcuug -5'
23240 3' -57.5 NC_005259.1 + 9083 0.7 0.44772
Target:  5'- ----aGCauaGGCCCGUUGcCCGCCGAGg -3'
miRNA:   3'- ccuugCGc--UCGGGCAAC-GGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 9503 0.72 0.338132
Target:  5'- aGGAACGUGcGCUCGUcgcgcgcgucgaccGCCGCCGggUc -3'
miRNA:   3'- -CCUUGCGCuCGGGCAa-------------CGGCGGCuuG- -5'
23240 3' -57.5 NC_005259.1 + 11322 0.75 0.226683
Target:  5'- cGGGCGCGcAGCUCGUcgucggucaUGCCGuuGAGCc -3'
miRNA:   3'- cCUUGCGC-UCGGGCA---------ACGGCggCUUG- -5'
23240 3' -57.5 NC_005259.1 + 11434 0.7 0.438312
Target:  5'- gGGGAUGCuuGGGCCgcuCGcUGCCGCCGGu- -3'
miRNA:   3'- -CCUUGCG--CUCGG---GCaACGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 11950 0.66 0.642061
Target:  5'- ---uCGCGcAGCCCGgcgaGCaCGUCGAACc -3'
miRNA:   3'- ccuuGCGC-UCGGGCaa--CG-GCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 14326 0.66 0.694834
Target:  5'- -cGACGCcgccGCCCGcgugcggGCCGCCGAc- -3'
miRNA:   3'- ccUUGCGcu--CGGGCaa-----CGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 14869 0.66 0.642061
Target:  5'- aGGuuCGCGcuGCCCGagccGCCGCCGuAUg -3'
miRNA:   3'- -CCuuGCGCu-CGGGCaa--CGGCGGCuUG- -5'
23240 3' -57.5 NC_005259.1 + 16148 0.66 0.646306
Target:  5'- --cACGaCGAGguugugguguccacuCCCGUgGCCGCCGAGg -3'
miRNA:   3'- ccuUGC-GCUC---------------GGGCAaCGGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 16407 0.73 0.312101
Target:  5'- gGGGACGC-AGCCCaccgaggUGcCCGUCGAGCg -3'
miRNA:   3'- -CCUUGCGcUCGGGca-----AC-GGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 17065 0.66 0.663261
Target:  5'- cGGuGCGCGcauuuGUgCGUcagGCCGCCGAu- -3'
miRNA:   3'- -CCuUGCGCu----CGgGCAa--CGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 17747 0.73 0.312101
Target:  5'- -cGACGCGA-UCCGUgagGCCGCCGcGCg -3'
miRNA:   3'- ccUUGCGCUcGGGCAa--CGGCGGCuUG- -5'
23240 3' -57.5 NC_005259.1 + 18475 0.66 0.65267
Target:  5'- uGAGC-CGuGCCCGacGCCGaCGAGCu -3'
miRNA:   3'- cCUUGcGCuCGGGCaaCGGCgGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.