miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23240 3' -57.5 NC_005259.1 + 47046 0.66 0.66749
Target:  5'- gGGAucuGCGCGAGCgUGUUGgugagcgaggcgagCGCCGAGa -3'
miRNA:   3'- -CCU---UGCGCUCGgGCAACg-------------GCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 40557 0.66 0.67277
Target:  5'- -cGACGCGcGCCCGcgcggugUUGCUGUCGGcgGCu -3'
miRNA:   3'- ccUUGCGCuCGGGC-------AACGGCGGCU--UG- -5'
23240 3' -57.5 NC_005259.1 + 23877 0.66 0.663261
Target:  5'- uGGAUGCGcuaUCCGcUGCCGcCCGAGCc -3'
miRNA:   3'- cCUUGCGCuc-GGGCaACGGC-GGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 14869 0.66 0.642061
Target:  5'- aGGuuCGCGcuGCCCGagccGCCGCCGuAUg -3'
miRNA:   3'- -CCuuGCGCu-CGGGCaa--CGGCGGCuUG- -5'
23240 3' -57.5 NC_005259.1 + 36237 0.66 0.67277
Target:  5'- uGGccAGCGCGAGCgCC--UGCgucggcagcgccaCGCCGGACa -3'
miRNA:   3'- -CC--UUGCGCUCG-GGcaACG-------------GCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 19692 0.66 0.65267
Target:  5'- cGGGAU-CGAGCaggcucgcaCGUuggcUGCCGCCGAGg -3'
miRNA:   3'- -CCUUGcGCUCGg--------GCA----ACGGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 17065 0.66 0.663261
Target:  5'- cGGuGCGCGcauuuGUgCGUcagGCCGCCGAu- -3'
miRNA:   3'- -CCuUGCGCu----CGgGCAa--CGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 21190 0.66 0.673825
Target:  5'- -cGGCGCGAGCaCCaagcUGCaagguGCCGAGCu -3'
miRNA:   3'- ccUUGCGCUCG-GGca--ACGg----CGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 39146 0.66 0.663261
Target:  5'- -cGAUGUGAucGCCgaCGUUGaaaCCGCCGAACa -3'
miRNA:   3'- ccUUGCGCU--CGG--GCAAC---GGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 45093 0.66 0.65267
Target:  5'- cGAGCGU--GCCCGUguaGCCgGUCGGGCc -3'
miRNA:   3'- cCUUGCGcuCGGGCAa--CGG-CGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 18475 0.66 0.65267
Target:  5'- uGAGC-CGuGCCCGacGCCGaCGAGCu -3'
miRNA:   3'- cCUUGcGCuCGGGCaaCGGCgGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 50237 0.66 0.642061
Target:  5'- cGAGCGCGGGCgCGgaucgugGCCaaCGGGCu -3'
miRNA:   3'- cCUUGCGCUCGgGCaa-----CGGcgGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 46677 0.66 0.65267
Target:  5'- ----gGCGAGCUCGgccugaGCCGCCGccGCg -3'
miRNA:   3'- ccuugCGCUCGGGCaa----CGGCGGCu-UG- -5'
23240 3' -57.5 NC_005259.1 + 16148 0.66 0.646306
Target:  5'- --cACGaCGAGguugugguguccacuCCCGUgGCCGCCGAGg -3'
miRNA:   3'- ccuUGC-GCUC---------------GGGCAaCGGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 41311 0.66 0.646306
Target:  5'- uGAGCGCGAGgUcgaccucgaaaagggCGgUGCCGUCGGAUa -3'
miRNA:   3'- cCUUGCGCUCgG---------------GCaACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 58577 0.66 0.663261
Target:  5'- cGGAuCGCG-GCgCG--GCUGCCGGGCc -3'
miRNA:   3'- -CCUuGCGCuCGgGCaaCGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 51418 0.66 0.69901
Target:  5'- aGGGGCcgguugaggucuuggGCGGGCCaCGggGCCucgcGCCGAu- -3'
miRNA:   3'- -CCUUG---------------CGCUCGG-GCaaCGG----CGGCUug -5'
23240 3' -57.5 NC_005259.1 + 46148 0.66 0.642061
Target:  5'- -uAGCGaCGAGCaugucgaauaCCGcUUGcCCGCCGGGCg -3'
miRNA:   3'- ccUUGC-GCUCG----------GGC-AAC-GGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 8665 0.66 0.65267
Target:  5'- cGGGcugccACGCGGGCaaCGggGCCGCCu--- -3'
miRNA:   3'- -CCU-----UGCGCUCGg-GCaaCGGCGGcuug -5'
23240 3' -57.5 NC_005259.1 + 11950 0.66 0.642061
Target:  5'- ---uCGCGcAGCCCGgcgaGCaCGUCGAACc -3'
miRNA:   3'- ccuuGCGC-UCGGGCaa--CG-GCGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.