miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23240 3' -57.5 NC_005259.1 + 43075 1.12 0.000534
Target:  5'- aGGAACGCGAGCCCGUUGCCGCCGAACa -3'
miRNA:   3'- -CCUUGCGCUCGGGCAACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 26377 0.83 0.067736
Target:  5'- cGGugGCGAGCCUGUUGCucgcgauuccgaCGCCGGGCg -3'
miRNA:   3'- cCUugCGCUCGGGCAACG------------GCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 37228 0.8 0.108248
Target:  5'- cGGGGCGCuGGCCCGUgccggauuggcUGCCGCCGuuGCc -3'
miRNA:   3'- -CCUUGCGcUCGGGCA-----------ACGGCGGCu-UG- -5'
23240 3' -57.5 NC_005259.1 + 24667 0.76 0.203128
Target:  5'- cGAGCGCGA-CCCGUUcGCCauccucgugcacguGCCGAGCg -3'
miRNA:   3'- cCUUGCGCUcGGGCAA-CGG--------------CGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 43730 0.76 0.2047
Target:  5'- cGAugGCG-GCCa--UGCCGCCGAGCc -3'
miRNA:   3'- cCUugCGCuCGGgcaACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 41467 0.75 0.226683
Target:  5'- aGAA-GCG-GCCCGUgacGCCGUCGAGCa -3'
miRNA:   3'- cCUUgCGCuCGGGCAa--CGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 11322 0.75 0.226683
Target:  5'- cGGGCGCGcAGCUCGUcgucggucaUGCCGuuGAGCc -3'
miRNA:   3'- cCUUGCGC-UCGGGCA---------ACGGCggCUUG- -5'
23240 3' -57.5 NC_005259.1 + 25436 0.73 0.28346
Target:  5'- aGGAAUGCGAGCCguaUGagGUCGgCGAGCg -3'
miRNA:   3'- -CCUUGCGCUCGG---GCaaCGGCgGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 36761 0.73 0.312101
Target:  5'- uGAGCGUGAcguuagGCgCGUUGCCGCCGucCu -3'
miRNA:   3'- cCUUGCGCU------CGgGCAACGGCGGCuuG- -5'
23240 3' -57.5 NC_005259.1 + 17747 0.73 0.312101
Target:  5'- -cGACGCGA-UCCGUgagGCCGCCGcGCg -3'
miRNA:   3'- ccUUGCGCUcGGGCAa--CGGCGGCuUG- -5'
23240 3' -57.5 NC_005259.1 + 16407 0.73 0.312101
Target:  5'- gGGGACGC-AGCCCaccgaggUGcCCGUCGAGCg -3'
miRNA:   3'- -CCUUGCGcUCGGGca-----AC-GGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 52552 0.72 0.327226
Target:  5'- uGGAuguGCGAGCCCGacaugGUCGaCCGGACc -3'
miRNA:   3'- -CCUug-CGCUCGGGCaa---CGGC-GGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 9503 0.72 0.338132
Target:  5'- aGGAACGUGcGCUCGUcgcgcgcgucgaccGCCGCCGggUc -3'
miRNA:   3'- -CCUUGCGCuCGGGCAa-------------CGGCGGCuuG- -5'
23240 3' -57.5 NC_005259.1 + 59860 0.72 0.342887
Target:  5'- gGGAucAUGCuGGCUCGUUGUgGCCGAAa -3'
miRNA:   3'- -CCU--UGCGcUCGGGCAACGgCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 6051 0.71 0.364042
Target:  5'- ---cCGaCGAGCUCGUgugcgcggugaucGCCGCCGAACa -3'
miRNA:   3'- ccuuGC-GCUCGGGCAa------------CGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 48378 0.71 0.367376
Target:  5'- -cGACGCGucuGUugUCGUUGCCGCCGAc- -3'
miRNA:   3'- ccUUGCGCu--CG--GGCAACGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 44320 0.71 0.367376
Target:  5'- cGAGCGUGuugagcGCCgCGUaGCUGCCGGGCu -3'
miRNA:   3'- cCUUGCGCu-----CGG-GCAaCGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 19544 0.71 0.375802
Target:  5'- aGGccGACGCGuauGCCCGcaGCCGUCGGGa -3'
miRNA:   3'- -CC--UUGCGCu--CGGGCaaCGGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 43009 0.71 0.384357
Target:  5'- aGGGACGaGAacaaaCCGgcgaUGCCGCCGAGCa -3'
miRNA:   3'- -CCUUGCgCUcg---GGCa---ACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 40314 0.71 0.384357
Target:  5'- cGAcacuCGUGAGCUCGaaaaGCUGCCGGACa -3'
miRNA:   3'- cCUu---GCGCUCGGGCaa--CGGCGGCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.