miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23240 3' -57.5 NC_005259.1 + 67166 0.68 0.547223
Target:  5'- uGGugGCG-GCCa--UGCCGCCGAu- -3'
miRNA:   3'- cCUugCGCuCGGgcaACGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 66039 0.69 0.49635
Target:  5'- --cGCGCGAGCUCGacguagacGCCGCCGugGGCc -3'
miRNA:   3'- ccuUGCGCUCGGGCaa------CGGCGGC--UUG- -5'
23240 3' -57.5 NC_005259.1 + 63126 0.69 0.516465
Target:  5'- aGGGugGUGAGgUCGUaGCCGCUGucCu -3'
miRNA:   3'- -CCUugCGCUCgGGCAaCGGCGGCuuG- -5'
23240 3' -57.5 NC_005259.1 + 62932 0.7 0.419842
Target:  5'- cGGuuUGCG-GCUCGcgcUGCUGCCGGGCa -3'
miRNA:   3'- -CCuuGCGCuCGGGCa--ACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 61255 0.67 0.589067
Target:  5'- cGggUGCGAGCaugcgaCCGUcgcuggucucgaUGCCGaCGAACg -3'
miRNA:   3'- cCuuGCGCUCG------GGCA------------ACGGCgGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 59860 0.72 0.342887
Target:  5'- gGGAucAUGCuGGCUCGUUGUgGCCGAAa -3'
miRNA:   3'- -CCU--UGCGcUCGGGCAACGgCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 59134 0.68 0.557608
Target:  5'- aGAGCGuCGAGCUCGgcagcggUGCCGggGAGCu -3'
miRNA:   3'- cCUUGC-GCUCGGGCa------ACGGCggCUUG- -5'
23240 3' -57.5 NC_005259.1 + 58577 0.66 0.663261
Target:  5'- cGGAuCGCG-GCgCG--GCUGCCGGGCc -3'
miRNA:   3'- -CCUuGCGCuCGgGCaaCGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 56406 0.68 0.526645
Target:  5'- cGAugGU--GCCCGgc-CCGCCGAGCu -3'
miRNA:   3'- cCUugCGcuCGGGCaacGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 55105 0.66 0.684352
Target:  5'- cGAugGCGGcgaaaaauGCaCCGgcUGCCguGCCGAGCa -3'
miRNA:   3'- cCUugCGCU--------CG-GGCa-ACGG--CGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 53731 0.71 0.391294
Target:  5'- uGAugGUGAugucGCCgGguguccacucggUGCCGCCGAACa -3'
miRNA:   3'- cCUugCGCU----CGGgCa-----------ACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 52552 0.72 0.327226
Target:  5'- uGGAuguGCGAGCCCGacaugGUCGaCCGGACc -3'
miRNA:   3'- -CCUug-CGCUCGGGCaa---CGGC-GGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 51418 0.66 0.69901
Target:  5'- aGGGGCcgguugaggucuuggGCGGGCCaCGggGCCucgcGCCGAu- -3'
miRNA:   3'- -CCUUG---------------CGCUCGG-GCaaCGG----CGGCUug -5'
23240 3' -57.5 NC_005259.1 + 50443 0.7 0.419842
Target:  5'- ---gUGCGGGCUCGggGUCGCCGGu- -3'
miRNA:   3'- ccuuGCGCUCGGGCaaCGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 50237 0.66 0.642061
Target:  5'- cGAGCGCGGGCgCGgaucgugGCCaaCGGGCu -3'
miRNA:   3'- cCUUGCGCUCGgGCaa-----CGGcgGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 48603 0.69 0.505359
Target:  5'- cGAGCGCGGGCgcuaccgCCGUgcgcacUGCCucGCCGAGa -3'
miRNA:   3'- cCUUGCGCUCG-------GGCA------ACGG--CGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 48378 0.71 0.367376
Target:  5'- -cGACGCGucuGUugUCGUUGCCGCCGAc- -3'
miRNA:   3'- ccUUGCGCu--CG--GGCAACGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 47818 0.68 0.557608
Target:  5'- aGAccuCGCGGGCcaCCGcUGCCGCUGAc- -3'
miRNA:   3'- cCUu--GCGCUCG--GGCaACGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 47046 0.66 0.66749
Target:  5'- gGGAucuGCGCGAGCgUGUUGgugagcgaggcgagCGCCGAGa -3'
miRNA:   3'- -CCU---UGCGCUCGgGCAACg-------------GCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 46901 0.7 0.438312
Target:  5'- uGAGCGCccgccGAGCaguccgCGUgcGCCGCCGAGCu -3'
miRNA:   3'- cCUUGCG-----CUCGg-----GCAa-CGGCGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.