miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23240 3' -57.5 NC_005259.1 + 45093 0.66 0.65267
Target:  5'- cGAGCGU--GCCCGUguaGCCgGUCGGGCc -3'
miRNA:   3'- cCUUGCGcuCGGGCAa--CGG-CGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 18475 0.66 0.65267
Target:  5'- uGAGC-CGuGCCCGacGCCGaCGAGCu -3'
miRNA:   3'- cCUUGcGCuCGGGCaaCGGCgGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 16148 0.66 0.646306
Target:  5'- --cACGaCGAGguugugguguccacuCCCGUgGCCGCCGAGg -3'
miRNA:   3'- ccuUGC-GCUC---------------GGGCAaCGGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 41311 0.66 0.646306
Target:  5'- uGAGCGCGAGgUcgaccucgaaaagggCGgUGCCGUCGGAUa -3'
miRNA:   3'- cCUUGCGCUCgG---------------GCaACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 46148 0.66 0.642061
Target:  5'- -uAGCGaCGAGCaugucgaauaCCGcUUGcCCGCCGGGCg -3'
miRNA:   3'- ccUUGC-GCUCG----------GGC-AAC-GGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 14869 0.66 0.642061
Target:  5'- aGGuuCGCGcuGCCCGagccGCCGCCGuAUg -3'
miRNA:   3'- -CCuuGCGCu-CGGGCaa--CGGCGGCuUG- -5'
23240 3' -57.5 NC_005259.1 + 50237 0.66 0.642061
Target:  5'- cGAGCGCGGGCgCGgaucgugGCCaaCGGGCu -3'
miRNA:   3'- cCUUGCGCUCGgGCaa-----CGGcgGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 11950 0.66 0.642061
Target:  5'- ---uCGCGcAGCCCGgcgaGCaCGUCGAACc -3'
miRNA:   3'- ccuuGCGC-UCGGGCaa--CG-GCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 42968 0.67 0.631444
Target:  5'- cGAACGgGAuGCCggggaucauCGUUGCCgccccGCCGAACn -3'
miRNA:   3'- cCUUGCgCU-CGG---------GCAACGG-----CGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 21454 0.67 0.631444
Target:  5'- aGAACGCu-GCCCGUgagGCUuugaaGCCGAuccGCg -3'
miRNA:   3'- cCUUGCGcuCGGGCAa--CGG-----CGGCU---UG- -5'
23240 3' -57.5 NC_005259.1 + 8425 0.67 0.620828
Target:  5'- cGAGCauGCGAuGCUCGUUGCCGgUGGu- -3'
miRNA:   3'- cCUUG--CGCU-CGGGCAACGGCgGCUug -5'
23240 3' -57.5 NC_005259.1 + 45636 0.67 0.620828
Target:  5'- cGGGCaGCGcGCCgG-UGCCGCCguGAACa -3'
miRNA:   3'- cCUUG-CGCuCGGgCaACGGCGG--CUUG- -5'
23240 3' -57.5 NC_005259.1 + 36120 0.67 0.610221
Target:  5'- uGAGCGUaAGCa-GUuggGCCGCCGGGCu -3'
miRNA:   3'- cCUUGCGcUCGggCAa--CGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 43202 0.67 0.610221
Target:  5'- cGGcGAUGuCGAcGCCCGccUGacCCGCCGAGCu -3'
miRNA:   3'- -CC-UUGC-GCU-CGGGCa-AC--GGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 31403 0.67 0.599631
Target:  5'- cGGAGCacaGCGc-CCCGaggucGCCGCUGAGCa -3'
miRNA:   3'- -CCUUG---CGCucGGGCaa---CGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 1810 0.67 0.594346
Target:  5'- uGGccGACGCGAGCaaucccgCCGaccugcucgccgcUGCCGCCGAGg -3'
miRNA:   3'- -CC--UUGCGCUCG-------GGCa------------ACGGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 26443 0.67 0.589067
Target:  5'- cGAGCggGCGGGCCgGUggGCCGauguggaaCGAGCa -3'
miRNA:   3'- cCUUG--CGCUCGGgCAa-CGGCg-------GCUUG- -5'
23240 3' -57.5 NC_005259.1 + 61255 0.67 0.589067
Target:  5'- cGggUGCGAGCaugcgaCCGUcgcuggucucgaUGCCGaCGAACg -3'
miRNA:   3'- cCuuGCGCUCG------GGCA------------ACGGCgGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 29061 0.67 0.589067
Target:  5'- cGAGCGCGguaucGGCCCGaucugcgcUGCCaagGCCGggUg -3'
miRNA:   3'- cCUUGCGC-----UCGGGCa-------ACGG---CGGCuuG- -5'
23240 3' -57.5 NC_005259.1 + 43859 0.68 0.558649
Target:  5'- cGAGCGCacccgugacgacaccGGCagCGUUGCCGCCGAc- -3'
miRNA:   3'- cCUUGCGc--------------UCGg-GCAACGGCGGCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.