miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23240 5' -57.5 NC_005259.1 + 43113 1.1 0.000551
Target:  5'- cAGGUCUGGCAGCAGCGACUUGAGCCCc -3'
miRNA:   3'- -UCCAGACCGUCGUCGCUGAACUCGGG- -5'
23240 5' -57.5 NC_005259.1 + 11509 0.81 0.075131
Target:  5'- uAGGUCaggccauccucGGCGGCAGCGAuCUUGAGCCg -3'
miRNA:   3'- -UCCAGa----------CCGUCGUCGCU-GAACUCGGg -5'
23240 5' -57.5 NC_005259.1 + 36388 0.76 0.167022
Target:  5'- gAGG-UUGGcCAGCgcgAGCGACUUGAGCgCCu -3'
miRNA:   3'- -UCCaGACC-GUCG---UCGCUGAACUCG-GG- -5'
23240 5' -57.5 NC_005259.1 + 59306 0.76 0.176163
Target:  5'- -uGUCgUGGCGGCAGCGGC--GAGCUCa -3'
miRNA:   3'- ucCAG-ACCGUCGUCGCUGaaCUCGGG- -5'
23240 5' -57.5 NC_005259.1 + 58968 0.75 0.195786
Target:  5'- cAGGUCgGGCAGCucgucGGCGACggcGAGCUUg -3'
miRNA:   3'- -UCCAGaCCGUCG-----UCGCUGaa-CUCGGG- -5'
23240 5' -57.5 NC_005259.1 + 27397 0.75 0.200982
Target:  5'- cGGUgUcGGCAGCGGCGGCagcucgGuGCCCg -3'
miRNA:   3'- uCCAgA-CCGUCGUCGCUGaa----CuCGGG- -5'
23240 5' -57.5 NC_005259.1 + 67787 0.73 0.272415
Target:  5'- cGGUgaccuugUUGGCAccGCGuGCGAgCUUGAGCCCg -3'
miRNA:   3'- uCCA-------GACCGU--CGU-CGCU-GAACUCGGG- -5'
23240 5' -57.5 NC_005259.1 + 55331 0.71 0.356171
Target:  5'- uGGUCUuggcGGCAGCGGUGGCgau-GCCg -3'
miRNA:   3'- uCCAGA----CCGUCGUCGCUGaacuCGGg -5'
23240 5' -57.5 NC_005259.1 + 2151 0.7 0.39049
Target:  5'- cGGUgCUGGcCAGCGGCGuc--GAGCCg -3'
miRNA:   3'- uCCA-GACC-GUCGUCGCugaaCUCGGg -5'
23240 5' -57.5 NC_005259.1 + 6190 0.69 0.465245
Target:  5'- uGGGugaUCUGaGCAGCgugAGCGGggUGAGCCg -3'
miRNA:   3'- -UCC---AGAC-CGUCG---UCGCUgaACUCGGg -5'
23240 5' -57.5 NC_005259.1 + 8757 0.68 0.525889
Target:  5'- gAGGUCgaggcccuUGGcCAGC-GCGGCggugaUGAGCUCg -3'
miRNA:   3'- -UCCAG--------ACC-GUCGuCGCUGa----ACUCGGG- -5'
23240 5' -57.5 NC_005259.1 + 27136 0.68 0.536298
Target:  5'- cGGUUugagGGCGGCuGCgGugUUGGGgCCa -3'
miRNA:   3'- uCCAGa---CCGUCGuCG-CugAACUCgGG- -5'
23240 5' -57.5 NC_005259.1 + 10340 0.68 0.536298
Target:  5'- cGGG-CUcGGCGGCAGCGgGCUcgacaucGGGCUCg -3'
miRNA:   3'- -UCCaGA-CCGUCGUCGC-UGAa------CUCGGG- -5'
23240 5' -57.5 NC_005259.1 + 45188 0.67 0.556266
Target:  5'- gAGGUCaGcGCGGUgaugacgGGCGAgUucgcguUGAGCCCg -3'
miRNA:   3'- -UCCAGaC-CGUCG-------UCGCUgA------ACUCGGG- -5'
23240 5' -57.5 NC_005259.1 + 48060 0.67 0.564739
Target:  5'- cGG-CgGGUAGCgccgccgcgcccugAGCGAUggugUUGAGCCCg -3'
miRNA:   3'- uCCaGaCCGUCG--------------UCGCUG----AACUCGGG- -5'
23240 5' -57.5 NC_005259.1 + 36429 0.67 0.57218
Target:  5'- uGGUCUGcGCAGCGucgccgaggucgaccGCGuCgagggUGAGCaCCg -3'
miRNA:   3'- uCCAGAC-CGUCGU---------------CGCuGa----ACUCG-GG- -5'
23240 5' -57.5 NC_005259.1 + 39762 0.67 0.578577
Target:  5'- -----cGGCAGCAGCGGC---AGCCUg -3'
miRNA:   3'- uccagaCCGUCGUCGCUGaacUCGGG- -5'
23240 5' -57.5 NC_005259.1 + 36494 0.66 0.62153
Target:  5'- cGGUCgacgGGCAGCucuGGCGugucCUUGAaccaCCCg -3'
miRNA:   3'- uCCAGa---CCGUCG---UCGCu---GAACUc---GGG- -5'
23240 5' -57.5 NC_005259.1 + 68120 0.66 0.643094
Target:  5'- cGGGUCgag-AGCAGCGGC--GAGCUCg -3'
miRNA:   3'- -UCCAGaccgUCGUCGCUGaaCUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.