miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23241 3' -59.9 NC_005259.1 + 42978 1.13 0.000302
Target:  5'- gCCGGGGAUCAUCGUUGCCGCCCCGCCg -3'
miRNA:   3'- -GGCCCCUAGUAGCAACGGCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 58689 0.78 0.113408
Target:  5'- aUCGcGGGGUCGgcUCGUcGCCGCCgCCGUCa -3'
miRNA:   3'- -GGC-CCCUAGU--AGCAaCGGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 3272 0.76 0.143614
Target:  5'- cUCGGGuGGUUuccCGUcGCCGCCUCGCCg -3'
miRNA:   3'- -GGCCC-CUAGua-GCAaCGGCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 16360 0.76 0.15126
Target:  5'- aCCGGaGAUCGUgCG-UGCCGCUgCGCCg -3'
miRNA:   3'- -GGCCcCUAGUA-GCaACGGCGGgGCGG- -5'
23241 3' -59.9 NC_005259.1 + 35498 0.75 0.181006
Target:  5'- uCCuGGGuuggCccCGUUGCCGCCgCCGCCg -3'
miRNA:   3'- -GGcCCCua--GuaGCAACGGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 24123 0.73 0.238189
Target:  5'- gCGGGGAcuaCAcCGccGCCGCCCUGCUc -3'
miRNA:   3'- gGCCCCUa--GUaGCaaCGGCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 31098 0.71 0.288716
Target:  5'- gUCGGGGAUCAgucCGaugaGUCGCCCgauguCGCCg -3'
miRNA:   3'- -GGCCCCUAGUa--GCaa--CGGCGGG-----GCGG- -5'
23241 3' -59.9 NC_005259.1 + 48369 0.71 0.309728
Target:  5'- gUCGGuuGUCgacgcgucuguuGUCGUUGCCGCcgacgCCCGCCg -3'
miRNA:   3'- -GGCCccUAG------------UAGCAACGGCG-----GGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 44462 0.71 0.324371
Target:  5'- aCCGGGGAUg--Cc--GCCGCCCUgGCCg -3'
miRNA:   3'- -GGCCCCUAguaGcaaCGGCGGGG-CGG- -5'
23241 3' -59.9 NC_005259.1 + 37019 0.7 0.339524
Target:  5'- gCCGGGGAaCAugacaaugUCGaucuuggUGcCCGCCaCCGCCc -3'
miRNA:   3'- -GGCCCCUaGU--------AGCa------AC-GGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 53203 0.7 0.371345
Target:  5'- cCCGGcGAUCAgauUCGc-GUCGCCCgCGCCc -3'
miRNA:   3'- -GGCCcCUAGU---AGCaaCGGCGGG-GCGG- -5'
23241 3' -59.9 NC_005259.1 + 46533 0.7 0.339524
Target:  5'- gUCGGGGAUCGccgagaucUgGUcGCCGaCCgCGCCu -3'
miRNA:   3'- -GGCCCCUAGU--------AgCAaCGGC-GGgGCGG- -5'
23241 3' -59.9 NC_005259.1 + 51493 0.69 0.379612
Target:  5'- gCCGGGGAUagGUCGacGCCGCCgaucucgaCGCg -3'
miRNA:   3'- -GGCCCCUAg-UAGCaaCGGCGGg-------GCGg -5'
23241 3' -59.9 NC_005259.1 + 7656 0.69 0.422748
Target:  5'- aCCGcc-GUCGUCGUgagCGCCCCGCCu -3'
miRNA:   3'- -GGCcccUAGUAGCAacgGCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 40148 0.69 0.422748
Target:  5'- gCCGucGGUUGUCGgUGcCCGCCCCGgCa -3'
miRNA:   3'- -GGCccCUAGUAGCaAC-GGCGGGGCgG- -5'
23241 3' -59.9 NC_005259.1 + 50285 0.69 0.422748
Target:  5'- -gGcGGGAaCGUCG-UGCaCGCUCUGCCa -3'
miRNA:   3'- ggC-CCCUaGUAGCaACG-GCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 11432 0.68 0.431723
Target:  5'- aCGGGGAUgcUUGg-GCCGCUcgcugCCGCCg -3'
miRNA:   3'- gGCCCCUAguAGCaaCGGCGG-----GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 27478 0.68 0.431723
Target:  5'- gCCGGGG-UCggUGUggccaCCGCCCCacgcGCCg -3'
miRNA:   3'- -GGCCCCuAGuaGCAac---GGCGGGG----CGG- -5'
23241 3' -59.9 NC_005259.1 + 37626 0.68 0.435344
Target:  5'- aUGGGGAUgAUgugcugcccgaugacCGcaccGCCGCCgCCGCCg -3'
miRNA:   3'- gGCCCCUAgUA---------------GCaa--CGGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 58858 0.68 0.440808
Target:  5'- cUCGGGcucgccGUCGUCGUcGUCGCCUCGgCa -3'
miRNA:   3'- -GGCCCc-----UAGUAGCAaCGGCGGGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.