Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23241 | 3' | -59.9 | NC_005259.1 | + | 3272 | 0.76 | 0.143614 |
Target: 5'- cUCGGGuGGUUuccCGUcGCCGCCUCGCCg -3' miRNA: 3'- -GGCCC-CUAGua-GCAaCGGCGGGGCGG- -5' |
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23241 | 3' | -59.9 | NC_005259.1 | + | 4895 | 0.67 | 0.497463 |
Target: 5'- aCCGaGGGUgAUCGgaugaGCUGCUuuGCCg -3' miRNA: 3'- -GGCcCCUAgUAGCaa---CGGCGGggCGG- -5' |
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23241 | 3' | -59.9 | NC_005259.1 | + | 6189 | 0.66 | 0.587794 |
Target: 5'- aUGGGuGAUCugagcagCGUgagcggggugaGCCGCCgCGCCg -3' miRNA: 3'- gGCCC-CUAGua-----GCAa----------CGGCGGgGCGG- -5' |
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23241 | 3' | -59.9 | NC_005259.1 | + | 7656 | 0.69 | 0.422748 |
Target: 5'- aCCGcc-GUCGUCGUgagCGCCCCGCCu -3' miRNA: 3'- -GGCcccUAGUAGCAacgGCGGGGCGG- -5' |
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23241 | 3' | -59.9 | NC_005259.1 | + | 9536 | 0.67 | 0.507227 |
Target: 5'- gCCGGG--UCAcCGgagaGCUGCCCgGCCu -3' miRNA: 3'- -GGCCCcuAGUaGCaa--CGGCGGGgCGG- -5' |
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23241 | 3' | -59.9 | NC_005259.1 | + | 11432 | 0.68 | 0.431723 |
Target: 5'- aCGGGGAUgcUUGg-GCCGCUcgcugCCGCCg -3' miRNA: 3'- gGCCCCUAguAGCaaCGGCGG-----GGCGG- -5' |
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23241 | 3' | -59.9 | NC_005259.1 | + | 12560 | 0.66 | 0.586766 |
Target: 5'- gCCGGGGuggCccgccagAUCcaUGCCGCCCCacGCg -3' miRNA: 3'- -GGCCCCua-G-------UAGcaACGGCGGGG--CGg -5' |
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23241 | 3' | -59.9 | NC_005259.1 | + | 13317 | 0.68 | 0.441723 |
Target: 5'- gCGGGGuauAUCuugguaacccacggCGggaCCGCCCCGCCg -3' miRNA: 3'- gGCCCC---UAGua------------GCaacGGCGGGGCGG- -5' |
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23241 | 3' | -59.9 | NC_005259.1 | + | 16360 | 0.76 | 0.15126 |
Target: 5'- aCCGGaGAUCGUgCG-UGCCGCUgCGCCg -3' miRNA: 3'- -GGCCcCUAGUA-GCaACGGCGGgGCGG- -5' |
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23241 | 3' | -59.9 | NC_005259.1 | + | 18705 | 0.68 | 0.450001 |
Target: 5'- aCGGcGGucugaccucgAUCAUCGg-GCCGCCCgGCa -3' miRNA: 3'- gGCC-CC----------UAGUAGCaaCGGCGGGgCGg -5' |
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23241 | 3' | -59.9 | NC_005259.1 | + | 19239 | 0.67 | 0.535983 |
Target: 5'- gUCGGcGAUgAUCGaugGCCGCCugccgggCCGCCc -3' miRNA: 3'- -GGCCcCUAgUAGCaa-CGGCGG-------GGCGG- -5' |
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23241 | 3' | -59.9 | NC_005259.1 | + | 23304 | 0.66 | 0.566306 |
Target: 5'- aUCGGGG-UCcggcgcgGUCGgUGUCGCCgaGCCg -3' miRNA: 3'- -GGCCCCuAG-------UAGCaACGGCGGggCGG- -5' |
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23241 | 3' | -59.9 | NC_005259.1 | + | 24123 | 0.73 | 0.238189 |
Target: 5'- gCGGGGAcuaCAcCGccGCCGCCCUGCUc -3' miRNA: 3'- gGCCCCUa--GUaGCaaCGGCGGGGCGG- -5' |
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23241 | 3' | -59.9 | NC_005259.1 | + | 25902 | 0.67 | 0.536985 |
Target: 5'- uCCGaGGAUgGcCGccugaGCCGCCgCCGCCg -3' miRNA: 3'- -GGCcCCUAgUaGCaa---CGGCGG-GGCGG- -5' |
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23241 | 3' | -59.9 | NC_005259.1 | + | 26304 | 0.66 | 0.573448 |
Target: 5'- aCGGGGAUCGacccauacauauccUCGggGUcgcacagauagcaCGCCCUcggGCCg -3' miRNA: 3'- gGCCCCUAGU--------------AGCaaCG-------------GCGGGG---CGG- -5' |
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23241 | 3' | -59.9 | NC_005259.1 | + | 26408 | 0.67 | 0.507227 |
Target: 5'- gCCGGGcg-CggCGgUGCCGCCguagaacgcaCCGCCg -3' miRNA: 3'- -GGCCCcuaGuaGCaACGGCGG----------GGCGG- -5' |
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23241 | 3' | -59.9 | NC_005259.1 | + | 27478 | 0.68 | 0.431723 |
Target: 5'- gCCGGGG-UCggUGUggccaCCGCCCCacgcGCCg -3' miRNA: 3'- -GGCCCCuAGuaGCAac---GGCGGGG----CGG- -5' |
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23241 | 3' | -59.9 | NC_005259.1 | + | 28212 | 0.66 | 0.598081 |
Target: 5'- uCCGuaGAcgGUCG-UGCCGCCaCCGUCg -3' miRNA: 3'- -GGCccCUagUAGCaACGGCGG-GGCGG- -5' |
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23241 | 3' | -59.9 | NC_005259.1 | + | 28759 | 0.67 | 0.507227 |
Target: 5'- gCGuGaGAUCGUCGccggUGCCGacgagguaCCCGCCg -3' miRNA: 3'- gGCcC-CUAGUAGCa---ACGGCg-------GGGCGG- -5' |
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23241 | 3' | -59.9 | NC_005259.1 | + | 31098 | 0.71 | 0.288716 |
Target: 5'- gUCGGGGAUCAgucCGaugaGUCGCCCgauguCGCCg -3' miRNA: 3'- -GGCCCCUAGUa--GCaa--CGGCGGG-----GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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