miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23241 3' -59.9 NC_005259.1 + 3272 0.76 0.143614
Target:  5'- cUCGGGuGGUUuccCGUcGCCGCCUCGCCg -3'
miRNA:   3'- -GGCCC-CUAGua-GCAaCGGCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 4895 0.67 0.497463
Target:  5'- aCCGaGGGUgAUCGgaugaGCUGCUuuGCCg -3'
miRNA:   3'- -GGCcCCUAgUAGCaa---CGGCGGggCGG- -5'
23241 3' -59.9 NC_005259.1 + 6189 0.66 0.587794
Target:  5'- aUGGGuGAUCugagcagCGUgagcggggugaGCCGCCgCGCCg -3'
miRNA:   3'- gGCCC-CUAGua-----GCAa----------CGGCGGgGCGG- -5'
23241 3' -59.9 NC_005259.1 + 7656 0.69 0.422748
Target:  5'- aCCGcc-GUCGUCGUgagCGCCCCGCCu -3'
miRNA:   3'- -GGCcccUAGUAGCAacgGCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 9536 0.67 0.507227
Target:  5'- gCCGGG--UCAcCGgagaGCUGCCCgGCCu -3'
miRNA:   3'- -GGCCCcuAGUaGCaa--CGGCGGGgCGG- -5'
23241 3' -59.9 NC_005259.1 + 11432 0.68 0.431723
Target:  5'- aCGGGGAUgcUUGg-GCCGCUcgcugCCGCCg -3'
miRNA:   3'- gGCCCCUAguAGCaaCGGCGG-----GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 12560 0.66 0.586766
Target:  5'- gCCGGGGuggCccgccagAUCcaUGCCGCCCCacGCg -3'
miRNA:   3'- -GGCCCCua-G-------UAGcaACGGCGGGG--CGg -5'
23241 3' -59.9 NC_005259.1 + 13317 0.68 0.441723
Target:  5'- gCGGGGuauAUCuugguaacccacggCGggaCCGCCCCGCCg -3'
miRNA:   3'- gGCCCC---UAGua------------GCaacGGCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 16360 0.76 0.15126
Target:  5'- aCCGGaGAUCGUgCG-UGCCGCUgCGCCg -3'
miRNA:   3'- -GGCCcCUAGUA-GCaACGGCGGgGCGG- -5'
23241 3' -59.9 NC_005259.1 + 18705 0.68 0.450001
Target:  5'- aCGGcGGucugaccucgAUCAUCGg-GCCGCCCgGCa -3'
miRNA:   3'- gGCC-CC----------UAGUAGCaaCGGCGGGgCGg -5'
23241 3' -59.9 NC_005259.1 + 19239 0.67 0.535983
Target:  5'- gUCGGcGAUgAUCGaugGCCGCCugccgggCCGCCc -3'
miRNA:   3'- -GGCCcCUAgUAGCaa-CGGCGG-------GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 23304 0.66 0.566306
Target:  5'- aUCGGGG-UCcggcgcgGUCGgUGUCGCCgaGCCg -3'
miRNA:   3'- -GGCCCCuAG-------UAGCaACGGCGGggCGG- -5'
23241 3' -59.9 NC_005259.1 + 24123 0.73 0.238189
Target:  5'- gCGGGGAcuaCAcCGccGCCGCCCUGCUc -3'
miRNA:   3'- gGCCCCUa--GUaGCaaCGGCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 25902 0.67 0.536985
Target:  5'- uCCGaGGAUgGcCGccugaGCCGCCgCCGCCg -3'
miRNA:   3'- -GGCcCCUAgUaGCaa---CGGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 26304 0.66 0.573448
Target:  5'- aCGGGGAUCGacccauacauauccUCGggGUcgcacagauagcaCGCCCUcggGCCg -3'
miRNA:   3'- gGCCCCUAGU--------------AGCaaCG-------------GCGGGG---CGG- -5'
23241 3' -59.9 NC_005259.1 + 26408 0.67 0.507227
Target:  5'- gCCGGGcg-CggCGgUGCCGCCguagaacgcaCCGCCg -3'
miRNA:   3'- -GGCCCcuaGuaGCaACGGCGG----------GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 27478 0.68 0.431723
Target:  5'- gCCGGGG-UCggUGUggccaCCGCCCCacgcGCCg -3'
miRNA:   3'- -GGCCCCuAGuaGCAac---GGCGGGG----CGG- -5'
23241 3' -59.9 NC_005259.1 + 28212 0.66 0.598081
Target:  5'- uCCGuaGAcgGUCG-UGCCGCCaCCGUCg -3'
miRNA:   3'- -GGCccCUagUAGCaACGGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 28759 0.67 0.507227
Target:  5'- gCGuGaGAUCGUCGccggUGCCGacgagguaCCCGCCg -3'
miRNA:   3'- gGCcC-CUAGUAGCa---ACGGCg-------GGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 31098 0.71 0.288716
Target:  5'- gUCGGGGAUCAgucCGaugaGUCGCCCgauguCGCCg -3'
miRNA:   3'- -GGCCCCUAGUa--GCaa--CGGCGGG-----GCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.