miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23241 3' -59.9 NC_005259.1 + 65878 0.66 0.577539
Target:  5'- gUGGGGcgGUCaAUCGgcggGaCgGUCCCGCCg -3'
miRNA:   3'- gGCCCC--UAG-UAGCaa--C-GgCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 64187 0.67 0.517073
Target:  5'- gCGucGGGAUCuuccUCGaUGUCGaCCUCGCCg -3'
miRNA:   3'- gGC--CCCUAGu---AGCaACGGC-GGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 59888 0.66 0.598081
Target:  5'- aCCGGGGGcgacgCGacUUGgUGCCgacacaguGCCCCGUCc -3'
miRNA:   3'- -GGCCCCUa----GU--AGCaACGG--------CGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 58858 0.68 0.440808
Target:  5'- cUCGGGcucgccGUCGUCGUcGUCGCCUCGgCa -3'
miRNA:   3'- -GGCCCc-----UAGUAGCAaCGGCGGGGCgG- -5'
23241 3' -59.9 NC_005259.1 + 58726 0.66 0.547042
Target:  5'- gCCGGGGGU-GUCGUUGgcaCCGgCaCCGgCg -3'
miRNA:   3'- -GGCCCCUAgUAGCAAC---GGCgG-GGCgG- -5'
23241 3' -59.9 NC_005259.1 + 58689 0.78 0.113408
Target:  5'- aUCGcGGGGUCGgcUCGUcGCCGCCgCCGUCa -3'
miRNA:   3'- -GGC-CCCUAGU--AGCAaCGGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 56391 0.66 0.598081
Target:  5'- gUCGGcuGAUCGUCucgauggUGcCCGgCCCGCCg -3'
miRNA:   3'- -GGCCc-CUAGUAGca-----AC-GGCgGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 56249 0.68 0.468697
Target:  5'- aCGuuGGGAUCGgcggccuugagCGccGCCGCCCgGCCc -3'
miRNA:   3'- gGC--CCCUAGUa----------GCaaCGGCGGGgCGG- -5'
23241 3' -59.9 NC_005259.1 + 55894 0.68 0.449077
Target:  5'- cUCGGGGGUCGcgcCGggGUCGCUggccagaCCGCUg -3'
miRNA:   3'- -GGCCCCUAGUa--GCaaCGGCGG-------GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 53463 0.68 0.478193
Target:  5'- gCGGcuGGcUCGUCGU--CCGgCCCGCCg -3'
miRNA:   3'- gGCC--CCuAGUAGCAacGGCgGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 53203 0.7 0.371345
Target:  5'- cCCGGcGAUCAgauUCGc-GUCGCCCgCGCCc -3'
miRNA:   3'- -GGCCcCUAGU---AGCaaCGGCGGG-GCGG- -5'
23241 3' -59.9 NC_005259.1 + 51493 0.69 0.379612
Target:  5'- gCCGGGGAUagGUCGacGCCGCCgaucucgaCGCg -3'
miRNA:   3'- -GGCCCCUAg-UAGCaaCGGCGGg-------GCGg -5'
23241 3' -59.9 NC_005259.1 + 50285 0.69 0.422748
Target:  5'- -gGcGGGAaCGUCG-UGCaCGCUCUGCCa -3'
miRNA:   3'- ggC-CCCUaGUAGCaACG-GCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 48369 0.71 0.309728
Target:  5'- gUCGGuuGUCgacgcgucuguuGUCGUUGCCGCcgacgCCCGCCg -3'
miRNA:   3'- -GGCCccUAG------------UAGCAACGGCG-----GGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 46533 0.7 0.339524
Target:  5'- gUCGGGGAUCGccgagaucUgGUcGCCGaCCgCGCCu -3'
miRNA:   3'- -GGCCCCUAGU--------AgCAaCGGC-GGgGCGG- -5'
23241 3' -59.9 NC_005259.1 + 45634 0.67 0.525999
Target:  5'- gCCGGGcaGcgCGcCGgUGCCGCCgugaacaCCGCCg -3'
miRNA:   3'- -GGCCC--CuaGUaGCaACGGCGG-------GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 45394 0.66 0.594992
Target:  5'- cUCGGGG-UCGcCGccgagcgcgcugaugGCCGCCgCCGCUg -3'
miRNA:   3'- -GGCCCCuAGUaGCaa-------------CGGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 45014 0.68 0.468697
Target:  5'- gCCGGGGc----CGc-GCCGCCCUGCUu -3'
miRNA:   3'- -GGCCCCuaguaGCaaCGGCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 44462 0.71 0.324371
Target:  5'- aCCGGGGAUg--Cc--GCCGCCCUgGCCg -3'
miRNA:   3'- -GGCCCCUAguaGcaaCGGCGGGG-CGG- -5'
23241 3' -59.9 NC_005259.1 + 44345 0.66 0.587794
Target:  5'- gCCGGGcuuguUCcacggcUCGUUGCCGaggCUCGCCa -3'
miRNA:   3'- -GGCCCcu---AGu-----AGCAACGGCg--GGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.