miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23241 3' -59.9 NC_005259.1 + 31239 0.68 0.468697
Target:  5'- aCCauuGGGcgCggCGgUGCCGCCCCacacGCCg -3'
miRNA:   3'- -GGc--CCCuaGuaGCaACGGCGGGG----CGG- -5'
23241 3' -59.9 NC_005259.1 + 33203 0.66 0.557157
Target:  5'- aCCauGGAUCAgcaCGUucuUGuuGCCgCCGCCg -3'
miRNA:   3'- -GGccCCUAGUa--GCA---ACggCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 35498 0.75 0.181006
Target:  5'- uCCuGGGuuggCccCGUUGCCGCCgCCGCCg -3'
miRNA:   3'- -GGcCCCua--GuaGCAACGGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 36646 0.66 0.598081
Target:  5'- cCCGc-GAUCAgCGagccGCCGCCCuCGCCg -3'
miRNA:   3'- -GGCccCUAGUaGCaa--CGGCGGG-GCGG- -5'
23241 3' -59.9 NC_005259.1 + 36681 0.67 0.533981
Target:  5'- gCCGGGGucuugaccguccUCGcccgccgaugagcUCG-UGCCGCucgaCCCGCCg -3'
miRNA:   3'- -GGCCCCu-----------AGU-------------AGCaACGGCG----GGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 37019 0.7 0.339524
Target:  5'- gCCGGGGAaCAugacaaugUCGaucuuggUGcCCGCCaCCGCCc -3'
miRNA:   3'- -GGCCCCUaGU--------AGCa------AC-GGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 37226 0.68 0.450001
Target:  5'- gCCGGGGcgCuggccCGUgccggauuggcUGCCGCCgUUGCCa -3'
miRNA:   3'- -GGCCCCuaGua---GCA-----------ACGGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 37626 0.68 0.435344
Target:  5'- aUGGGGAUgAUgugcugcccgaugacCGcaccGCCGCCgCCGCCg -3'
miRNA:   3'- gGCCCCUAgUA---------------GCaa--CGGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 38511 0.66 0.57447
Target:  5'- gCGGGc--CGcCGUUGUagagauagaacucgCGCCCCGCCg -3'
miRNA:   3'- gGCCCcuaGUaGCAACG--------------GCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 39889 0.66 0.567325
Target:  5'- aCCGa--AUCGUUGUcGCCGCcgCCCGCCu -3'
miRNA:   3'- -GGCcccUAGUAGCAaCGGCG--GGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 40148 0.69 0.422748
Target:  5'- gCCGucGGUUGUCGgUGcCCGCCCCGgCa -3'
miRNA:   3'- -GGCccCUAGUAGCaAC-GGCGGGGCgG- -5'
23241 3' -59.9 NC_005259.1 + 41529 0.67 0.487783
Target:  5'- aCGGGGAaaagcUCGUCGUcgcaGUCGUCgcgagcguuacaCCGCCg -3'
miRNA:   3'- gGCCCCU-----AGUAGCAa---CGGCGG------------GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 42772 0.66 0.547042
Target:  5'- cUCGGcGGUC-UCGggGCCGCCaCCGaUCa -3'
miRNA:   3'- -GGCCcCUAGuAGCaaCGGCGG-GGC-GG- -5'
23241 3' -59.9 NC_005259.1 + 42978 1.13 0.000302
Target:  5'- gCCGGGGAUCAUCGUUGCCGCCCCGCCg -3'
miRNA:   3'- -GGCCCCUAGUAGCAACGGCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 44345 0.66 0.587794
Target:  5'- gCCGGGcuuguUCcacggcUCGUUGCCGaggCUCGCCa -3'
miRNA:   3'- -GGCCCcu---AGu-----AGCAACGGCg--GGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 44462 0.71 0.324371
Target:  5'- aCCGGGGAUg--Cc--GCCGCCCUgGCCg -3'
miRNA:   3'- -GGCCCCUAguaGcaaCGGCGGGG-CGG- -5'
23241 3' -59.9 NC_005259.1 + 45014 0.68 0.468697
Target:  5'- gCCGGGGc----CGc-GCCGCCCUGCUu -3'
miRNA:   3'- -GGCCCCuaguaGCaaCGGCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 45394 0.66 0.594992
Target:  5'- cUCGGGG-UCGcCGccgagcgcgcugaugGCCGCCgCCGCUg -3'
miRNA:   3'- -GGCCCCuAGUaGCaa-------------CGGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 45634 0.67 0.525999
Target:  5'- gCCGGGcaGcgCGcCGgUGCCGCCgugaacaCCGCCg -3'
miRNA:   3'- -GGCCC--CuaGUaGCaACGGCGG-------GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 46533 0.7 0.339524
Target:  5'- gUCGGGGAUCGccgagaucUgGUcGCCGaCCgCGCCu -3'
miRNA:   3'- -GGCCCCUAGU--------AgCAaCGGC-GGgGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.