miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23241 3' -59.9 NC_005259.1 + 64187 0.67 0.517073
Target:  5'- gCGucGGGAUCuuccUCGaUGUCGaCCUCGCCg -3'
miRNA:   3'- gGC--CCCUAGu---AGCaACGGC-GGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 9536 0.67 0.507227
Target:  5'- gCCGGG--UCAcCGgagaGCUGCCCgGCCu -3'
miRNA:   3'- -GGCCCcuAGUaGCaa--CGGCGGGgCGG- -5'
23241 3' -59.9 NC_005259.1 + 28759 0.67 0.507227
Target:  5'- gCGuGaGAUCGUCGccggUGCCGacgagguaCCCGCCg -3'
miRNA:   3'- gGCcC-CUAGUAGCa---ACGGCg-------GGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 26408 0.67 0.507227
Target:  5'- gCCGGGcg-CggCGgUGCCGCCguagaacgcaCCGCCg -3'
miRNA:   3'- -GGCCCcuaGuaGCaACGGCGG----------GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 4895 0.67 0.497463
Target:  5'- aCCGaGGGUgAUCGgaugaGCUGCUuuGCCg -3'
miRNA:   3'- -GGCcCCUAgUAGCaa---CGGCGGggCGG- -5'
23241 3' -59.9 NC_005259.1 + 41529 0.67 0.487783
Target:  5'- aCGGGGAaaagcUCGUCGUcgcaGUCGUCgcgagcguuacaCCGCCg -3'
miRNA:   3'- gGCCCCU-----AGUAGCAa---CGGCGG------------GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 53463 0.68 0.478193
Target:  5'- gCGGcuGGcUCGUCGU--CCGgCCCGCCg -3'
miRNA:   3'- gGCC--CCuAGUAGCAacGGCgGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 56249 0.68 0.468697
Target:  5'- aCGuuGGGAUCGgcggccuugagCGccGCCGCCCgGCCc -3'
miRNA:   3'- gGC--CCCUAGUa----------GCaaCGGCGGGgCGG- -5'
23241 3' -59.9 NC_005259.1 + 45014 0.68 0.468697
Target:  5'- gCCGGGGc----CGc-GCCGCCCUGCUu -3'
miRNA:   3'- -GGCCCCuaguaGCaaCGGCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 31239 0.68 0.468697
Target:  5'- aCCauuGGGcgCggCGgUGCCGCCCCacacGCCg -3'
miRNA:   3'- -GGc--CCCuaGuaGCaACGGCGGGG----CGG- -5'
23241 3' -59.9 NC_005259.1 + 18705 0.68 0.450001
Target:  5'- aCGGcGGucugaccucgAUCAUCGg-GCCGCCCgGCa -3'
miRNA:   3'- gGCC-CC----------UAGUAGCaaCGGCGGGgCGg -5'
23241 3' -59.9 NC_005259.1 + 37226 0.68 0.450001
Target:  5'- gCCGGGGcgCuggccCGUgccggauuggcUGCCGCCgUUGCCa -3'
miRNA:   3'- -GGCCCCuaGua---GCA-----------ACGGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 55894 0.68 0.449077
Target:  5'- cUCGGGGGUCGcgcCGggGUCGCUggccagaCCGCUg -3'
miRNA:   3'- -GGCCCCUAGUa--GCaaCGGCGG-------GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 13317 0.68 0.441723
Target:  5'- gCGGGGuauAUCuugguaacccacggCGggaCCGCCCCGCCg -3'
miRNA:   3'- gGCCCC---UAGua------------GCaacGGCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 58858 0.68 0.440808
Target:  5'- cUCGGGcucgccGUCGUCGUcGUCGCCUCGgCa -3'
miRNA:   3'- -GGCCCc-----UAGUAGCAaCGGCGGGGCgG- -5'
23241 3' -59.9 NC_005259.1 + 37626 0.68 0.435344
Target:  5'- aUGGGGAUgAUgugcugcccgaugacCGcaccGCCGCCgCCGCCg -3'
miRNA:   3'- gGCCCCUAgUA---------------GCaa--CGGCGG-GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 11432 0.68 0.431723
Target:  5'- aCGGGGAUgcUUGg-GCCGCUcgcugCCGCCg -3'
miRNA:   3'- gGCCCCUAguAGCaaCGGCGG-----GGCGG- -5'
23241 3' -59.9 NC_005259.1 + 27478 0.68 0.431723
Target:  5'- gCCGGGG-UCggUGUggccaCCGCCCCacgcGCCg -3'
miRNA:   3'- -GGCCCCuAGuaGCAac---GGCGGGG----CGG- -5'
23241 3' -59.9 NC_005259.1 + 50285 0.69 0.422748
Target:  5'- -gGcGGGAaCGUCG-UGCaCGCUCUGCCa -3'
miRNA:   3'- ggC-CCCUaGUAGCaACG-GCGGGGCGG- -5'
23241 3' -59.9 NC_005259.1 + 40148 0.69 0.422748
Target:  5'- gCCGucGGUUGUCGgUGcCCGCCCCGgCa -3'
miRNA:   3'- -GGCccCUAGUAGCaAC-GGCGGGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.