miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23243 5' -55.2 NC_005259.1 + 34485 0.66 0.75906
Target:  5'- ---gUGGUGUCCcccgccgacgcgacGACGauGUCGCCGACa -3'
miRNA:   3'- acaaGCCGCAGG--------------UUGU--CAGCGGCUGa -5'
23243 5' -55.2 NC_005259.1 + 53241 0.66 0.772055
Target:  5'- gGUUCGcGcCG-CCGACAccGUCGCCGccGCUg -3'
miRNA:   3'- aCAAGC-C-GCaGGUUGU--CAGCGGC--UGA- -5'
23243 5' -55.2 NC_005259.1 + 42387 0.66 0.781892
Target:  5'- cGggCaGGCcgGUCCAugAGUCGUCGuACUc -3'
miRNA:   3'- aCaaG-CCG--CAGGUugUCAGCGGC-UGA- -5'
23243 5' -55.2 NC_005259.1 + 35262 0.66 0.791578
Target:  5'- uUGUUCGcGCccgCCGcgccGgGGUCGCCGAUg -3'
miRNA:   3'- -ACAAGC-CGca-GGU----UgUCAGCGGCUGa -5'
23243 5' -55.2 NC_005259.1 + 2156 0.67 0.710487
Target:  5'- cUGgccagCGGCGUCgAGCcgccGGUUGCCGAg- -3'
miRNA:   3'- -ACaa---GCCGCAGgUUG----UCAGCGGCUga -5'
23243 5' -55.2 NC_005259.1 + 61605 0.67 0.710487
Target:  5'- gUGgggUCGGCGgggaaCAGCAGaccggcacCGCCGACg -3'
miRNA:   3'- -ACa--AGCCGCag---GUUGUCa-------GCGGCUGa -5'
23243 5' -55.2 NC_005259.1 + 20651 0.67 0.740724
Target:  5'- cGUUCGGCGgcaccggggCCGAggacgccaugaugUGGUCGCaCGGCa -3'
miRNA:   3'- aCAAGCCGCa--------GGUU-------------GUCAGCG-GCUGa -5'
23243 5' -55.2 NC_005259.1 + 60738 0.68 0.657032
Target:  5'- cGUgUCGGgGUCCAuuugcaguGCAGUCgGCuCGGCg -3'
miRNA:   3'- aCA-AGCCgCAGGU--------UGUCAG-CG-GCUGa -5'
23243 5' -55.2 NC_005259.1 + 27933 0.69 0.592241
Target:  5'- gGUUCGGCGacCCAGC--UCGCCGGu- -3'
miRNA:   3'- aCAAGCCGCa-GGUUGucAGCGGCUga -5'
23243 5' -55.2 NC_005259.1 + 60050 0.69 0.612721
Target:  5'- cGUUCGGgGUCUucucGggcucaggcucggGCGGcUCGCCGACUu -3'
miRNA:   3'- aCAAGCCgCAGG----U-------------UGUC-AGCGGCUGA- -5'
23243 5' -55.2 NC_005259.1 + 42504 0.7 0.549574
Target:  5'- cGUcCGGCGguguggCCAGCAGcCGuCCGGCc -3'
miRNA:   3'- aCAaGCCGCa-----GGUUGUCaGC-GGCUGa -5'
23243 5' -55.2 NC_005259.1 + 23304 0.72 0.457821
Target:  5'- --aUCGGgGUCCGGCGcggucgguGUCGCCGAg- -3'
miRNA:   3'- acaAGCCgCAGGUUGU--------CAGCGGCUga -5'
23243 5' -55.2 NC_005259.1 + 42446 1.08 0.001566
Target:  5'- gUGUUCGGCGUCCAACAGUCGCCGACUa -3'
miRNA:   3'- -ACAAGCCGCAGGUUGUCAGCGGCUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.