miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23244 3' -61 NC_005259.1 + 48472 0.66 0.541733
Target:  5'- gCGCCGggucgCgUCGGCCuguucCUCGACgCGCUu -3'
miRNA:   3'- -GCGGCa----GgGGCCGGua---GAGCUG-GUGG- -5'
23244 3' -61 NC_005259.1 + 53155 0.72 0.242137
Target:  5'- aGCCGcuacgCCgaGGCCgAUCUCG-CCACCg -3'
miRNA:   3'- gCGGCa----GGggCCGG-UAGAGCuGGUGG- -5'
23244 3' -61 NC_005259.1 + 37426 0.72 0.242137
Target:  5'- cCGCCGUgCCauuGGCCAUCggGACaUACCa -3'
miRNA:   3'- -GCGGCAgGGg--CCGGUAGagCUG-GUGG- -5'
23244 3' -61 NC_005259.1 + 56375 0.71 0.253517
Target:  5'- aGCCGUCgCgGGCCGcgucggcugaucgUCUCGAuggugcccggcCCGCCg -3'
miRNA:   3'- gCGGCAGgGgCCGGU-------------AGAGCU-----------GGUGG- -5'
23244 3' -61 NC_005259.1 + 40163 0.71 0.254128
Target:  5'- uGcCCG-CCCCGGCag-CUCGACCGUCa -3'
miRNA:   3'- gC-GGCaGGGGCCGguaGAGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 15541 0.71 0.260305
Target:  5'- cCGCCGUCaCUGGCCGgugccacccUCaggUGGCCACCc -3'
miRNA:   3'- -GCGGCAGgGGCCGGU---------AGa--GCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 57669 0.71 0.266604
Target:  5'- uCGaCCGUgUCCGGCCAa-UCGACCgugGCCa -3'
miRNA:   3'- -GC-GGCAgGGGCCGGUagAGCUGG---UGG- -5'
23244 3' -61 NC_005259.1 + 6933 0.7 0.293032
Target:  5'- cCGCCG-CCUugaGGCCGagCUCG-CCGCCg -3'
miRNA:   3'- -GCGGCaGGGg--CCGGUa-GAGCuGGUGG- -5'
23244 3' -61 NC_005259.1 + 39940 0.7 0.304162
Target:  5'- gGUCGUCCUuggugacgaacuUGGUCAggcugagcgacugCUCGACCACCu -3'
miRNA:   3'- gCGGCAGGG------------GCCGGUa------------GAGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 6579 0.72 0.23062
Target:  5'- gGCCG-CCUCGGaCAaauggCUCGACUACCg -3'
miRNA:   3'- gCGGCaGGGGCCgGUa----GAGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 66737 0.72 0.225037
Target:  5'- aCGCgGUCaggcugaugcugCCCGGCCugccagUCGACCGCCu -3'
miRNA:   3'- -GCGgCAG------------GGGCCGGuag---AGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 48398 0.72 0.214215
Target:  5'- cCGCCGaCgCCC-GCCGUCgagucaccgCGACCGCCa -3'
miRNA:   3'- -GCGGCaG-GGGcCGGUAGa--------GCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 67757 0.84 0.031673
Target:  5'- gGCCG-CCCCGGCCA-C-CGGCCACCg -3'
miRNA:   3'- gCGGCaGGGGCCGGUaGaGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 48143 0.79 0.07255
Target:  5'- cCGCCG-CCCCGGCCAccacCUCGcccgaaaccgcccccGCCGCCg -3'
miRNA:   3'- -GCGGCaGGGGCCGGUa---GAGC---------------UGGUGG- -5'
23244 3' -61 NC_005259.1 + 63181 0.78 0.084318
Target:  5'- cCGCCGaggugaucgcaCCCCGGUCGUgcgcCUCGACCGCCu -3'
miRNA:   3'- -GCGGCa----------GGGGCCGGUA----GAGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 20725 0.78 0.0899
Target:  5'- cCGCCGcgCgaaaugacguauuggUCCGGCCAUCcCGACCACCg -3'
miRNA:   3'- -GCGGCa-G---------------GGGCCGGUAGaGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 13102 0.77 0.107114
Target:  5'- -aCCGaCCCCGGCCcgCUCGGCgGCUa -3'
miRNA:   3'- gcGGCaGGGGCCGGuaGAGCUGgUGG- -5'
23244 3' -61 NC_005259.1 + 24483 0.77 0.109978
Target:  5'- aGCuCGUCCUCGGCgAUgUCaaGACCACCa -3'
miRNA:   3'- gCG-GCAGGGGCCGgUAgAG--CUGGUGG- -5'
23244 3' -61 NC_005259.1 + 20155 0.75 0.139167
Target:  5'- aGCCGgugCCCUGGCCAcCgCGcCCGCCg -3'
miRNA:   3'- gCGGCa--GGGGCCGGUaGaGCuGGUGG- -5'
23244 3' -61 NC_005259.1 + 66630 0.72 0.214215
Target:  5'- -cUCGUCCCUGGCCAccgCUCGgauuGCUGCCg -3'
miRNA:   3'- gcGGCAGGGGCCGGUa--GAGC----UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.