miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23244 3' -61 NC_005259.1 + 282 0.69 0.367874
Target:  5'- aCGCCG-CCUacgCGGCCucgcgcugAUCUCGACCGg- -3'
miRNA:   3'- -GCGGCaGGG---GCCGG--------UAGAGCUGGUgg -5'
23244 3' -61 NC_005259.1 + 3296 0.66 0.512033
Target:  5'- uCGCCgGUCCCuCGGCgagcgcugCGUCgacgUGAgCGCCg -3'
miRNA:   3'- -GCGG-CAGGG-GCCG--------GUAGa---GCUgGUGG- -5'
23244 3' -61 NC_005259.1 + 3914 0.68 0.3919
Target:  5'- uGCCGUaccugaaCCCCGGCgagacCGUgUCGGUCACCu -3'
miRNA:   3'- gCGGCA-------GGGGCCG-----GUAgAGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 5087 0.66 0.502281
Target:  5'- gGCCGgugUCaCCGGCgAUCUgcguaGACCGCg -3'
miRNA:   3'- gCGGCa--GG-GGCCGgUAGAg----CUGGUGg -5'
23244 3' -61 NC_005259.1 + 6579 0.72 0.23062
Target:  5'- gGCCG-CCUCGGaCAaauggCUCGACUACCg -3'
miRNA:   3'- gCGGCaGGGGCCgGUa----GAGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 6933 0.7 0.293032
Target:  5'- cCGCCG-CCUugaGGCCGagCUCG-CCGCCg -3'
miRNA:   3'- -GCGGCaGGGg--CCGGUa-GAGCuGGUGG- -5'
23244 3' -61 NC_005259.1 + 7862 0.67 0.458545
Target:  5'- gCGCCGaCCCCGGUgGcccgagugcuuggaCUCGggcaGCCGCCg -3'
miRNA:   3'- -GCGGCaGGGGCCGgUa-------------GAGC----UGGUGG- -5'
23244 3' -61 NC_005259.1 + 9534 0.68 0.416045
Target:  5'- cCGCCGggucaccggagagcUgCCCGGCC---UCGACCGCg -3'
miRNA:   3'- -GCGGC--------------AgGGGCCGGuagAGCUGGUGg -5'
23244 3' -61 NC_005259.1 + 9590 0.66 0.492611
Target:  5'- aCGUCGUCggUCUGGCCGUa--GAgCACCg -3'
miRNA:   3'- -GCGGCAG--GGGCCGGUAgagCUgGUGG- -5'
23244 3' -61 NC_005259.1 + 9714 0.66 0.512033
Target:  5'- -aCCGUCCUCgGGCCGg-UCGAgcUCGCCg -3'
miRNA:   3'- gcGGCAGGGG-CCGGUagAGCU--GGUGG- -5'
23244 3' -61 NC_005259.1 + 10425 0.68 0.427561
Target:  5'- -aCCGUCCUCGGCgAgCUCGAC-AUCg -3'
miRNA:   3'- gcGGCAGGGGCCGgUaGAGCUGgUGG- -5'
23244 3' -61 NC_005259.1 + 12509 0.68 0.409923
Target:  5'- aGCCG--CUgGGCCG-CUCGGCUACCc -3'
miRNA:   3'- gCGGCagGGgCCGGUaGAGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 13102 0.77 0.107114
Target:  5'- -aCCGaCCCCGGCCcgCUCGGCgGCUa -3'
miRNA:   3'- gcGGCaGGGGCCGGuaGAGCUGgUGG- -5'
23244 3' -61 NC_005259.1 + 13411 0.68 0.392746
Target:  5'- gGCC-UUCCUGGCCGgggUCG-CCGCCg -3'
miRNA:   3'- gCGGcAGGGGCCGGUag-AGCuGGUGG- -5'
23244 3' -61 NC_005259.1 + 13506 0.66 0.535744
Target:  5'- -cUCG-CCCCGGUCuGUCggucaccgagacugCGGCCACCa -3'
miRNA:   3'- gcGGCaGGGGCCGG-UAGa-------------GCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 15161 0.69 0.367874
Target:  5'- gGCCGaggCCgaGGCCAUCcUCGACaCGCa -3'
miRNA:   3'- gCGGCa--GGggCCGGUAG-AGCUG-GUGg -5'
23244 3' -61 NC_005259.1 + 15301 0.68 0.427561
Target:  5'- cCGCCGaCCUCGccGCCcacgGUCUCGACgGCg -3'
miRNA:   3'- -GCGGCaGGGGC--CGG----UAGAGCUGgUGg -5'
23244 3' -61 NC_005259.1 + 15541 0.71 0.260305
Target:  5'- cCGCCGUCaCUGGCCGgugccacccUCaggUGGCCACCc -3'
miRNA:   3'- -GCGGCAGgGGCCGGU---------AGa--GCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 17023 0.66 0.492611
Target:  5'- cCGCCaUCCUCGGCgcuggCAUCgacaaccgCGACC-CCg -3'
miRNA:   3'- -GCGGcAGGGGCCG-----GUAGa-------GCUGGuGG- -5'
23244 3' -61 NC_005259.1 + 17243 0.66 0.506172
Target:  5'- aGCCgGUCUcacgCUGGCCAccucagacaaggcagUgCUCGACCGCUa -3'
miRNA:   3'- gCGG-CAGG----GGCCGGU---------------A-GAGCUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.