miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23244 3' -61 NC_005259.1 + 68750 0.69 0.367874
Target:  5'- aGCuCGaCCCCGGCgAcCUCG-CCAUCg -3'
miRNA:   3'- gCG-GCaGGGGCCGgUaGAGCuGGUGG- -5'
23244 3' -61 NC_005259.1 + 67757 0.84 0.031673
Target:  5'- gGCCG-CCCCGGCCA-C-CGGCCACCg -3'
miRNA:   3'- gCGGCaGGGGCCGGUaGaGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 66737 0.72 0.225037
Target:  5'- aCGCgGUCaggcugaugcugCCCGGCCugccagUCGACCGCCu -3'
miRNA:   3'- -GCGgCAG------------GGGCCGGuag---AGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 66630 0.72 0.214215
Target:  5'- -cUCGUCCCUGGCCAccgCUCGgauuGCUGCCg -3'
miRNA:   3'- gcGGCAGGGGCCGGUa--GAGC----UGGUGG- -5'
23244 3' -61 NC_005259.1 + 63595 0.68 0.409923
Target:  5'- gGCUGUUCUCGuccuCCAUggCGGCCACCg -3'
miRNA:   3'- gCGGCAGGGGCc---GGUAgaGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 63181 0.78 0.084318
Target:  5'- cCGCCGaggugaucgcaCCCCGGUCGUgcgcCUCGACCGCCu -3'
miRNA:   3'- -GCGGCa----------GGGGCCGGUA----GAGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 62921 0.68 0.427561
Target:  5'- aCGCuCGUCCUCGGUUugcggCUCGcgcuGCUGCCg -3'
miRNA:   3'- -GCG-GCAGGGGCCGGua---GAGC----UGGUGG- -5'
23244 3' -61 NC_005259.1 + 62121 0.69 0.344105
Target:  5'- aGUCaGUCaCCgaGGUgauCGUCUCGACCACCu -3'
miRNA:   3'- gCGG-CAG-GGg-CCG---GUAGAGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 61918 0.66 0.515956
Target:  5'- gGUCGUCgUCGGCagcucgGUCUCucgcgcgggugccggGGCCACCg -3'
miRNA:   3'- gCGGCAGgGGCCGg-----UAGAG---------------CUGGUGG- -5'
23244 3' -61 NC_005259.1 + 60278 0.66 0.502281
Target:  5'- gCGCUG-CCgggCGGCCAUCgucgucggugCGGCCACg -3'
miRNA:   3'- -GCGGCaGGg--GCCGGUAGa---------GCUGGUGg -5'
23244 3' -61 NC_005259.1 + 60132 0.66 0.521862
Target:  5'- gGCCucGUCCUgcgCGGCC---UUGGCCGCCg -3'
miRNA:   3'- gCGG--CAGGG---GCCGGuagAGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 58838 0.69 0.367874
Target:  5'- uCGCCGcCCUCGGUCucaccCUCGGgcUCGCCg -3'
miRNA:   3'- -GCGGCaGGGGCCGGua---GAGCU--GGUGG- -5'
23244 3' -61 NC_005259.1 + 58441 0.68 0.401276
Target:  5'- gCGCUGaucgguggCCuuGGUgAUCgCGGCCACCa -3'
miRNA:   3'- -GCGGCa-------GGggCCGgUAGaGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 58169 0.66 0.531764
Target:  5'- gCGCaCGggaUCUCGacGCaCGUCUUGACCGCCg -3'
miRNA:   3'- -GCG-GCa--GGGGC--CG-GUAGAGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 57978 0.66 0.492611
Target:  5'- uCGCCGggaucgugaCCCCGGUCGagccagCGACCAUg -3'
miRNA:   3'- -GCGGCa--------GGGGCCGGUaga---GCUGGUGg -5'
23244 3' -61 NC_005259.1 + 57669 0.71 0.266604
Target:  5'- uCGaCCGUgUCCGGCCAa-UCGACCgugGCCa -3'
miRNA:   3'- -GC-GGCAgGGGCCGGUagAGCUGG---UGG- -5'
23244 3' -61 NC_005259.1 + 56717 0.66 0.502281
Target:  5'- uGgUGUCCCCGaGCgCGUCgaCGuauCCGCCa -3'
miRNA:   3'- gCgGCAGGGGC-CG-GUAGa-GCu--GGUGG- -5'
23244 3' -61 NC_005259.1 + 56375 0.71 0.253517
Target:  5'- aGCCGUCgCgGGCCGcgucggcugaucgUCUCGAuggugcccggcCCGCCg -3'
miRNA:   3'- gCGGCAGgGgCCGGU-------------AGAGCU-----------GGUGG- -5'
23244 3' -61 NC_005259.1 + 56271 0.7 0.321461
Target:  5'- gCGCCGcCgCCCGGCCcguaUCGG-CACCa -3'
miRNA:   3'- -GCGGCaG-GGGCCGGuag-AGCUgGUGG- -5'
23244 3' -61 NC_005259.1 + 53195 0.68 0.384335
Target:  5'- gCGgUGUCCCCGGCgAUCagauucgcgUCGcCCGCg -3'
miRNA:   3'- -GCgGCAGGGGCCGgUAG---------AGCuGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.