miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23244 3' -61 NC_005259.1 + 53155 0.72 0.242137
Target:  5'- aGCCGcuacgCCgaGGCCgAUCUCG-CCACCg -3'
miRNA:   3'- gCGGCa----GGggCCGG-UAGAGCuGGUGG- -5'
23244 3' -61 NC_005259.1 + 50649 0.67 0.445639
Target:  5'- aCGCCG-CCCUcggGGCCAUa--GGgCACCa -3'
miRNA:   3'- -GCGGCaGGGG---CCGGUAgagCUgGUGG- -5'
23244 3' -61 NC_005259.1 + 48472 0.66 0.541733
Target:  5'- gCGCCGggucgCgUCGGCCuguucCUCGACgCGCUu -3'
miRNA:   3'- -GCGGCa----GgGGCCGGua---GAGCUG-GUGG- -5'
23244 3' -61 NC_005259.1 + 48398 0.72 0.214215
Target:  5'- cCGCCGaCgCCC-GCCGUCgagucaccgCGACCGCCa -3'
miRNA:   3'- -GCGGCaG-GGGcCGGUAGa--------GCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 48143 0.79 0.07255
Target:  5'- cCGCCG-CCCCGGCCAccacCUCGcccgaaaccgcccccGCCGCCg -3'
miRNA:   3'- -GCGGCaGGGGCCGGUa---GAGC---------------UGGUGG- -5'
23244 3' -61 NC_005259.1 + 47292 0.69 0.344105
Target:  5'- cCGCCGUCgCCGGaCAg--CGACC-CCu -3'
miRNA:   3'- -GCGGCAGgGGCCgGUagaGCUGGuGG- -5'
23244 3' -61 NC_005259.1 + 45822 0.66 0.531764
Target:  5'- aGCCGgggaugaCCauGCCGUC-CGcACCACCg -3'
miRNA:   3'- gCGGCag-----GGgcCGGUAGaGC-UGGUGG- -5'
23244 3' -61 NC_005259.1 + 45507 0.68 0.401276
Target:  5'- uCGCUGUggCCaCCGcGCCgGUgUUGGCCGCCg -3'
miRNA:   3'- -GCGGCA--GG-GGC-CGG-UAgAGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 45243 0.66 0.492611
Target:  5'- uGCUcagGUCgCCGGUCAUCgCGAaCGCCg -3'
miRNA:   3'- gCGG---CAGgGGCCGGUAGaGCUgGUGG- -5'
23244 3' -61 NC_005259.1 + 42756 0.68 0.401276
Target:  5'- gGCgGUUcucgaucugCUCGGCgGUCUCGggGCCGCCa -3'
miRNA:   3'- gCGgCAG---------GGGCCGgUAGAGC--UGGUGG- -5'
23244 3' -61 NC_005259.1 + 42672 0.66 0.541733
Target:  5'- gGCUGcUgUUGGCgAUCUCGACC-CCg -3'
miRNA:   3'- gCGGCaGgGGCCGgUAGAGCUGGuGG- -5'
23244 3' -61 NC_005259.1 + 42227 1.11 0.000347
Target:  5'- cCGCCGUCCCCGGCCAUCUCGACCACCu -3'
miRNA:   3'- -GCGGCAGGGGCCGGUAGAGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 40163 0.71 0.254128
Target:  5'- uGcCCG-CCCCGGCag-CUCGACCGUCa -3'
miRNA:   3'- gC-GGCaGGGGCCGguaGAGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 39940 0.7 0.304162
Target:  5'- gGUCGUCCUuggugacgaacuUGGUCAggcugagcgacugCUCGACCACCu -3'
miRNA:   3'- gCGGCAGGG------------GCCGGUa------------GAGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 37426 0.72 0.242137
Target:  5'- cCGCCGUgCCauuGGCCAUCggGACaUACCa -3'
miRNA:   3'- -GCGGCAgGGg--CCGGUAGagCUG-GUGG- -5'
23244 3' -61 NC_005259.1 + 37257 0.66 0.521862
Target:  5'- cCGCCGUUgCCaGGCUuga--GGCCGCCc -3'
miRNA:   3'- -GCGGCAGgGG-CCGGuagagCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 36673 0.69 0.359827
Target:  5'- cCGCCG-CCgCCGGggucuugaCCGUcCUCGcCCGCCg -3'
miRNA:   3'- -GCGGCaGG-GGCC--------GGUA-GAGCuGGUGG- -5'
23244 3' -61 NC_005259.1 + 36631 0.68 0.409923
Target:  5'- gCGCCG-CCCgcaaGGCCcgCgaucagCGAgCCGCCg -3'
miRNA:   3'- -GCGGCaGGGg---CCGGuaGa-----GCU-GGUGG- -5'
23244 3' -61 NC_005259.1 + 36225 0.67 0.445639
Target:  5'- uGCCGagcaCCuuGGCCAgcgCGAgCGCCu -3'
miRNA:   3'- gCGGCa---GGggCCGGUagaGCUgGUGG- -5'
23244 3' -61 NC_005259.1 + 35692 0.66 0.492611
Target:  5'- aCGCCGUgCCCGGCgagggGUCgcugaCGAgguauCCGCCc -3'
miRNA:   3'- -GCGGCAgGGGCCGg----UAGa----GCU-----GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.