miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23244 3' -61 NC_005259.1 + 22444 0.66 0.531764
Target:  5'- gGCCaucgaCUCUGGCUAcCUCGugCGCCc -3'
miRNA:   3'- gCGGca---GGGGCCGGUaGAGCugGUGG- -5'
23244 3' -61 NC_005259.1 + 48472 0.66 0.541733
Target:  5'- gCGCCGggucgCgUCGGCCuguucCUCGACgCGCUu -3'
miRNA:   3'- -GCGGCa----GgGGCCGGua---GAGCUG-GUGG- -5'
23244 3' -61 NC_005259.1 + 13506 0.66 0.535744
Target:  5'- -cUCG-CCCCGGUCuGUCggucaccgagacugCGGCCACCa -3'
miRNA:   3'- gcGGCaGGGGCCGG-UAGa-------------GCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 36225 0.67 0.445639
Target:  5'- uGCCGagcaCCuuGGCCAgcgCGAgCGCCu -3'
miRNA:   3'- gCGGCa---GGggCCGGUagaGCUgGUGG- -5'
23244 3' -61 NC_005259.1 + 20113 0.67 0.473535
Target:  5'- cCGCCGUCUCaaGGCCGcacUGGCUGCCg -3'
miRNA:   3'- -GCGGCAGGGg-CCGGUagaGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 26508 0.67 0.435642
Target:  5'- uCGCCG-CCCggcgagaagagcgCGGUgAgcagCUUGGCCACCa -3'
miRNA:   3'- -GCGGCaGGG-------------GCCGgUa---GAGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 29466 0.67 0.464137
Target:  5'- uGCCG--CCCGGCuCGgcaUgGACCGCCg -3'
miRNA:   3'- gCGGCagGGGCCG-GUag-AgCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 24051 0.67 0.445639
Target:  5'- aCGUCGUCggCgCGGUgcucaAUCUCGugCACCg -3'
miRNA:   3'- -GCGGCAG--GgGCCGg----UAGAGCugGUGG- -5'
23244 3' -61 NC_005259.1 + 50649 0.67 0.445639
Target:  5'- aCGCCG-CCCUcggGGCCAUa--GGgCACCa -3'
miRNA:   3'- -GCGGCaGGGG---CCGGUAgagCUgGUGG- -5'
23244 3' -61 NC_005259.1 + 7862 0.67 0.458545
Target:  5'- gCGCCGaCCCCGGUgGcccgagugcuuggaCUCGggcaGCCGCCg -3'
miRNA:   3'- -GCGGCaGGGGCCGgUa-------------GAGC----UGGUGG- -5'
23244 3' -61 NC_005259.1 + 26118 0.67 0.454837
Target:  5'- cCGCCG-CCgCCGGUCGccggUC-CGacGCCGCCg -3'
miRNA:   3'- -GCGGCaGG-GGCCGGU----AGaGC--UGGUGG- -5'
23244 3' -61 NC_005259.1 + 45507 0.68 0.401276
Target:  5'- uCGCUGUggCCaCCGcGCCgGUgUUGGCCGCCg -3'
miRNA:   3'- -GCGGCA--GG-GGC-CGG-UAgAGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 33848 0.68 0.401276
Target:  5'- uCGCCGUCCuuGGUCGaCUCaAgCAUCu -3'
miRNA:   3'- -GCGGCAGGggCCGGUaGAGcUgGUGG- -5'
23244 3' -61 NC_005259.1 + 58441 0.68 0.401276
Target:  5'- gCGCUGaucgguggCCuuGGUgAUCgCGGCCACCa -3'
miRNA:   3'- -GCGGCa-------GGggCCGgUAGaGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 42756 0.68 0.401276
Target:  5'- gGCgGUUcucgaucugCUCGGCgGUCUCGggGCCGCCa -3'
miRNA:   3'- gCGgCAG---------GGGCCGgUAGAGC--UGGUGG- -5'
23244 3' -61 NC_005259.1 + 36631 0.68 0.409923
Target:  5'- gCGCCG-CCCgcaaGGCCcgCgaucagCGAgCCGCCg -3'
miRNA:   3'- -GCGGCaGGGg---CCGGuaGa-----GCU-GGUGG- -5'
23244 3' -61 NC_005259.1 + 22686 0.68 0.409923
Target:  5'- cCGCCGauuUCCCC-GCCGUCgcCG-UCACCg -3'
miRNA:   3'- -GCGGC---AGGGGcCGGUAGa-GCuGGUGG- -5'
23244 3' -61 NC_005259.1 + 35539 0.68 0.426668
Target:  5'- cCGCCGUCgccgauccgCCCGaugacuuGCCG-C-CGACCGCCg -3'
miRNA:   3'- -GCGGCAG---------GGGC-------CGGUaGaGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 10425 0.68 0.427561
Target:  5'- -aCCGUCCUCGGCgAgCUCGAC-AUCg -3'
miRNA:   3'- gcGGCAGGGGCCGgUaGAGCUGgUGG- -5'
23244 3' -61 NC_005259.1 + 15301 0.68 0.427561
Target:  5'- cCGCCGaCCUCGccGCCcacgGUCUCGACgGCg -3'
miRNA:   3'- -GCGGCaGGGGC--CGG----UAGAGCUGgUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.