miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23244 3' -61 NC_005259.1 + 30126 0.7 0.306995
Target:  5'- uGCCGUCCggcugcgauaccUCGGgCAgCUCGACCggGCCg -3'
miRNA:   3'- gCGGCAGG------------GGCCgGUaGAGCUGG--UGG- -5'
23244 3' -61 NC_005259.1 + 25947 0.7 0.306995
Target:  5'- aCGCCgGUgCCCGGCCcgC-CGA-CGCCu -3'
miRNA:   3'- -GCGG-CAgGGGCCGGuaGaGCUgGUGG- -5'
23244 3' -61 NC_005259.1 + 32911 0.7 0.314165
Target:  5'- aGCCa--CCCGGCCcgCUCGGgCGCg -3'
miRNA:   3'- gCGGcagGGGCCGGuaGAGCUgGUGg -5'
23244 3' -61 NC_005259.1 + 27530 0.7 0.321461
Target:  5'- aCGCCGUcgaggcCCCaCGGCgGgauguugCGGCCACCg -3'
miRNA:   3'- -GCGGCA------GGG-GCCGgUaga----GCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 56271 0.7 0.321461
Target:  5'- gCGCCGcCgCCCGGCCcguaUCGG-CACCa -3'
miRNA:   3'- -GCGGCaG-GGGCCGGuag-AGCUgGUGG- -5'
23244 3' -61 NC_005259.1 + 62121 0.69 0.344105
Target:  5'- aGUCaGUCaCCgaGGUgauCGUCUCGACCACCu -3'
miRNA:   3'- gCGG-CAG-GGg-CCG---GUAGAGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 47292 0.69 0.344105
Target:  5'- cCGCCGUCgCCGGaCAg--CGACC-CCu -3'
miRNA:   3'- -GCGGCAGgGGCCgGUagaGCUGGuGG- -5'
23244 3' -61 NC_005259.1 + 36673 0.69 0.359827
Target:  5'- cCGCCG-CCgCCGGggucuugaCCGUcCUCGcCCGCCg -3'
miRNA:   3'- -GCGGCaGG-GGCC--------GGUA-GAGCuGGUGG- -5'
23244 3' -61 NC_005259.1 + 58838 0.69 0.367874
Target:  5'- uCGCCGcCCUCGGUCucaccCUCGGgcUCGCCg -3'
miRNA:   3'- -GCGGCaGGGGCCGGua---GAGCU--GGUGG- -5'
23244 3' -61 NC_005259.1 + 15161 0.69 0.367874
Target:  5'- gGCCGaggCCgaGGCCAUCcUCGACaCGCa -3'
miRNA:   3'- gCGGCa--GGggCCGGUAG-AGCUG-GUGg -5'
23244 3' -61 NC_005259.1 + 282 0.69 0.367874
Target:  5'- aCGCCG-CCUacgCGGCCucgcgcugAUCUCGACCGg- -3'
miRNA:   3'- -GCGGCaGGG---GCCGG--------UAGAGCUGGUgg -5'
23244 3' -61 NC_005259.1 + 68750 0.69 0.367874
Target:  5'- aGCuCGaCCCCGGCgAcCUCG-CCAUCg -3'
miRNA:   3'- gCG-GCaGGGGCCGgUaGAGCuGGUGG- -5'
23244 3' -61 NC_005259.1 + 53195 0.68 0.384335
Target:  5'- gCGgUGUCCCCGGCgAUCagauucgcgUCGcCCGCg -3'
miRNA:   3'- -GCgGCAGGGGCCGgUAG---------AGCuGGUGg -5'
23244 3' -61 NC_005259.1 + 3914 0.68 0.3919
Target:  5'- uGCCGUaccugaaCCCCGGCgagacCGUgUCGGUCACCu -3'
miRNA:   3'- gCGGCA-------GGGGCCG-----GUAgAGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 28331 0.68 0.392746
Target:  5'- uGCCGUCCuuGGCggcgaaAUCgaGGCCACg -3'
miRNA:   3'- gCGGCAGGggCCGg-----UAGagCUGGUGg -5'
23244 3' -61 NC_005259.1 + 13411 0.68 0.392746
Target:  5'- gGCC-UUCCUGGCCGgggUCG-CCGCCg -3'
miRNA:   3'- gCGGcAGGGGCCGGUag-AGCuGGUGG- -5'
23244 3' -61 NC_005259.1 + 42756 0.68 0.401276
Target:  5'- gGCgGUUcucgaucugCUCGGCgGUCUCGggGCCGCCa -3'
miRNA:   3'- gCGgCAG---------GGGCCGgUAGAGC--UGGUGG- -5'
23244 3' -61 NC_005259.1 + 58441 0.68 0.401276
Target:  5'- gCGCUGaucgguggCCuuGGUgAUCgCGGCCACCa -3'
miRNA:   3'- -GCGGCa-------GGggCCGgUAGaGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 33848 0.68 0.401276
Target:  5'- uCGCCGUCCuuGGUCGaCUCaAgCAUCu -3'
miRNA:   3'- -GCGGCAGGggCCGGUaGAGcUgGUGG- -5'
23244 3' -61 NC_005259.1 + 45507 0.68 0.401276
Target:  5'- uCGCUGUggCCaCCGcGCCgGUgUUGGCCGCCg -3'
miRNA:   3'- -GCGGCA--GG-GGC-CGG-UAgAGCUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.