miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23244 3' -61 NC_005259.1 + 19267 0.66 0.502281
Target:  5'- gGCCG-CCCgaUGGaaGUCaUGACCACCa -3'
miRNA:   3'- gCGGCaGGG--GCCggUAGaGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 20113 0.67 0.473535
Target:  5'- cCGCCGUCUCaaGGCCGcacUGGCUGCCg -3'
miRNA:   3'- -GCGGCAGGGg-CCGGUagaGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 20155 0.75 0.139167
Target:  5'- aGCCGgugCCCUGGCCAcCgCGcCCGCCg -3'
miRNA:   3'- gCGGCa--GGGGCCGGUaGaGCuGGUGG- -5'
23244 3' -61 NC_005259.1 + 20725 0.78 0.0899
Target:  5'- cCGCCGcgCgaaaugacguauuggUCCGGCCAUCcCGACCACCg -3'
miRNA:   3'- -GCGGCa-G---------------GGGCCGGUAGaGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 22444 0.66 0.531764
Target:  5'- gGCCaucgaCUCUGGCUAcCUCGugCGCCc -3'
miRNA:   3'- gCGGca---GGGGCCGGUaGAGCugGUGG- -5'
23244 3' -61 NC_005259.1 + 22686 0.68 0.409923
Target:  5'- cCGCCGauuUCCCC-GCCGUCgcCG-UCACCg -3'
miRNA:   3'- -GCGGC---AGGGGcCGGUAGa-GCuGGUGG- -5'
23244 3' -61 NC_005259.1 + 24051 0.67 0.445639
Target:  5'- aCGUCGUCggCgCGGUgcucaAUCUCGugCACCg -3'
miRNA:   3'- -GCGGCAG--GgGCCGg----UAGAGCugGUGG- -5'
23244 3' -61 NC_005259.1 + 24483 0.77 0.109978
Target:  5'- aGCuCGUCCUCGGCgAUgUCaaGACCACCa -3'
miRNA:   3'- gCG-GCAGGGGCCGgUAgAG--CUGGUGG- -5'
23244 3' -61 NC_005259.1 + 25947 0.7 0.306995
Target:  5'- aCGCCgGUgCCCGGCCcgC-CGA-CGCCu -3'
miRNA:   3'- -GCGG-CAgGGGCCGGuaGaGCUgGUGG- -5'
23244 3' -61 NC_005259.1 + 26118 0.67 0.454837
Target:  5'- cCGCCG-CCgCCGGUCGccggUC-CGacGCCGCCg -3'
miRNA:   3'- -GCGGCaGG-GGCCGGU----AGaGC--UGGUGG- -5'
23244 3' -61 NC_005259.1 + 26508 0.67 0.435642
Target:  5'- uCGCCG-CCCggcgagaagagcgCGGUgAgcagCUUGGCCACCa -3'
miRNA:   3'- -GCGGCaGGG-------------GCCGgUa---GAGCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 27530 0.7 0.321461
Target:  5'- aCGCCGUcgaggcCCCaCGGCgGgauguugCGGCCACCg -3'
miRNA:   3'- -GCGGCA------GGG-GCCGgUaga----GCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 28331 0.68 0.392746
Target:  5'- uGCCGUCCuuGGCggcgaaAUCgaGGCCACg -3'
miRNA:   3'- gCGGCAGGggCCGg-----UAGagCUGGUGg -5'
23244 3' -61 NC_005259.1 + 29466 0.67 0.464137
Target:  5'- uGCCG--CCCGGCuCGgcaUgGACCGCCg -3'
miRNA:   3'- gCGGCagGGGCCG-GUag-AgCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 30126 0.7 0.306995
Target:  5'- uGCCGUCCggcugcgauaccUCGGgCAgCUCGACCggGCCg -3'
miRNA:   3'- gCGGCAGG------------GGCCgGUaGAGCUGG--UGG- -5'
23244 3' -61 NC_005259.1 + 30617 0.66 0.521862
Target:  5'- uCGCCGUUUCUGGUgAUCgagUGAaugUCGCCg -3'
miRNA:   3'- -GCGGCAGGGGCCGgUAGa--GCU---GGUGG- -5'
23244 3' -61 NC_005259.1 + 30659 0.66 0.540733
Target:  5'- aGCCGcagcacaUCgCCCGGCgAguagCU-GGCCACCu -3'
miRNA:   3'- gCGGC-------AG-GGGCCGgUa---GAgCUGGUGG- -5'
23244 3' -61 NC_005259.1 + 32911 0.7 0.314165
Target:  5'- aGCCa--CCCGGCCcgCUCGGgCGCg -3'
miRNA:   3'- gCGGcagGGGCCGGuaGAGCUgGUGg -5'
23244 3' -61 NC_005259.1 + 33848 0.68 0.401276
Target:  5'- uCGCCGUCCuuGGUCGaCUCaAgCAUCu -3'
miRNA:   3'- -GCGGCAGGggCCGGUaGAGcUgGUGG- -5'
23244 3' -61 NC_005259.1 + 35539 0.68 0.426668
Target:  5'- cCGCCGUCgccgauccgCCCGaugacuuGCCG-C-CGACCGCCg -3'
miRNA:   3'- -GCGGCAG---------GGGC-------CGGUaGaGCUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.