miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23244 5' -57.2 NC_005259.1 + 68701 0.66 0.686532
Target:  5'- cGAGGcGGgcagCGCGUCGGuGCCCgaGAa -3'
miRNA:   3'- -CUCCaCCa---GUGCAGCUcCGGGaaCUg -5'
23244 5' -57.2 NC_005259.1 + 55896 0.66 0.654511
Target:  5'- cGGG-GGUCGCGcCGGGGUCgcUGGCc -3'
miRNA:   3'- cUCCaCCAGUGCaGCUCCGGgaACUG- -5'
23244 5' -57.2 NC_005259.1 + 60343 0.68 0.558359
Target:  5'- aAGGcGGcgaUCAgGUCGAGGCCCUgcccGAa -3'
miRNA:   3'- cUCCaCC---AGUgCAGCUCCGGGAa---CUg -5'
23244 5' -57.2 NC_005259.1 + 10621 0.68 0.547853
Target:  5'- -cGuGUGGgUGCGUCGAGGCCgaacagCUUGGCc -3'
miRNA:   3'- cuC-CACCaGUGCAGCUCCGG------GAACUG- -5'
23244 5' -57.2 NC_005259.1 + 68847 0.69 0.466581
Target:  5'- uGAGGUGGgccaUCAUGUCGAcuuGCCCgcgccgGGCg -3'
miRNA:   3'- -CUCCACC----AGUGCAGCUc--CGGGaa----CUG- -5'
23244 5' -57.2 NC_005259.1 + 8753 0.7 0.437721
Target:  5'- -----cGUCGagGUCGAGGCCCUUGGCc -3'
miRNA:   3'- cuccacCAGUg-CAGCUCCGGGAACUG- -5'
23244 5' -57.2 NC_005259.1 + 54189 0.71 0.374595
Target:  5'- -uGGUGGcccUCAgG-CGGcGGCCCUUGACg -3'
miRNA:   3'- cuCCACC---AGUgCaGCU-CCGGGAACUG- -5'
23244 5' -57.2 NC_005259.1 + 42262 1.09 0.000763
Target:  5'- uGAGGUGGUCACGUCGAGGCCCUUGACa -3'
miRNA:   3'- -CUCCACCAGUGCAGCUCCGGGAACUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.