miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23246 5' -53.5 NC_005259.1 + 36118 0.66 0.849731
Target:  5'- gGUGAGCguaagcaGuuGGGCcGCCGGGCu- -3'
miRNA:   3'- gCACUCGag-----CuuUUCGaCGGCCUGug -5'
23246 5' -53.5 NC_005259.1 + 4981 0.66 0.849731
Target:  5'- --cGAGUUCGGccgaugGCCGGGCACu -3'
miRNA:   3'- gcaCUCGAGCUuuucgaCGGCCUGUG- -5'
23246 5' -53.5 NC_005259.1 + 55653 0.66 0.8322
Target:  5'- cCGUGGGCUC---AGGUcauUGCCGGuCAUu -3'
miRNA:   3'- -GCACUCGAGcuuUUCG---ACGGCCuGUG- -5'
23246 5' -53.5 NC_005259.1 + 46154 0.66 0.8322
Target:  5'- --cGAGCaugUCGAAuaccGCUugcccGCCGGGCGCg -3'
miRNA:   3'- gcaCUCG---AGCUUuu--CGA-----CGGCCUGUG- -5'
23246 5' -53.5 NC_005259.1 + 17736 0.66 0.823112
Target:  5'- cCGUGGcuGCUCGAcgcgauccguGAGGCcGCCGcGCGCc -3'
miRNA:   3'- -GCACU--CGAGCU----------UUUCGaCGGCcUGUG- -5'
23246 5' -53.5 NC_005259.1 + 63640 0.67 0.804341
Target:  5'- uCGUGGcgagcuGCUCGcu-GGCcgggacGCCGGACACc -3'
miRNA:   3'- -GCACU------CGAGCuuuUCGa-----CGGCCUGUG- -5'
23246 5' -53.5 NC_005259.1 + 46679 0.67 0.794679
Target:  5'- --cGAGCUCGGccuGAGCcGCCGccgcgucccucGACGCg -3'
miRNA:   3'- gcaCUCGAGCUu--UUCGaCGGC-----------CUGUG- -5'
23246 5' -53.5 NC_005259.1 + 9381 0.67 0.794679
Target:  5'- --cGAGCUCGGAGAGCaacGCaCGcGCGCc -3'
miRNA:   3'- gcaCUCGAGCUUUUCGa--CG-GCcUGUG- -5'
23246 5' -53.5 NC_005259.1 + 58571 0.67 0.784846
Target:  5'- -uUGGGC-CGGAucgcggcgcGGCUGCCGGGC-Cg -3'
miRNA:   3'- gcACUCGaGCUUu--------UCGACGGCCUGuG- -5'
23246 5' -53.5 NC_005259.1 + 46833 0.67 0.774854
Target:  5'- aGUGAGCgcccCGgcGAGCUGCCcGAgucCGCu -3'
miRNA:   3'- gCACUCGa---GCuuUUCGACGGcCU---GUG- -5'
23246 5' -53.5 NC_005259.1 + 68850 0.67 0.773846
Target:  5'- gGUGGGCcaucaugUCGAcuuGCccgcGCCGGGCGCg -3'
miRNA:   3'- gCACUCG-------AGCUuuuCGa---CGGCCUGUG- -5'
23246 5' -53.5 NC_005259.1 + 41308 0.68 0.764713
Target:  5'- cCGUGAGCgcgaggucgaccUCGAAAagGGCggugccGUCGGAUACc -3'
miRNA:   3'- -GCACUCG------------AGCUUU--UCGa-----CGGCCUGUG- -5'
23246 5' -53.5 NC_005259.1 + 10253 0.68 0.744032
Target:  5'- gGUGuGCUUGAuGAGCggGCCGGucuCAg -3'
miRNA:   3'- gCACuCGAGCUuUUCGa-CGGCCu--GUg -5'
23246 5' -53.5 NC_005259.1 + 6205 0.68 0.744032
Target:  5'- gCGUGAGCggGguGAGCcGCCGcgccGACACc -3'
miRNA:   3'- -GCACUCGagCuuUUCGaCGGC----CUGUG- -5'
23246 5' -53.5 NC_005259.1 + 37505 0.68 0.722896
Target:  5'- gGUGAGCaCGAu--GCUGCCcGACGa -3'
miRNA:   3'- gCACUCGaGCUuuuCGACGGcCUGUg -5'
23246 5' -53.5 NC_005259.1 + 66645 0.69 0.66867
Target:  5'- ----cGCUCGGAuuGCUGCCGGuCGg -3'
miRNA:   3'- gcacuCGAGCUUuuCGACGGCCuGUg -5'
23246 5' -53.5 NC_005259.1 + 23346 0.69 0.66867
Target:  5'- --cGGGCUCGAggcugccugcGAGGCcGCCGaGGCAUg -3'
miRNA:   3'- gcaCUCGAGCU----------UUUCGaCGGC-CUGUG- -5'
23246 5' -53.5 NC_005259.1 + 48904 0.7 0.635631
Target:  5'- --aGAGCUCaacGAGCUGCUGGGCc- -3'
miRNA:   3'- gcaCUCGAGcuuUUCGACGGCCUGug -5'
23246 5' -53.5 NC_005259.1 + 44328 0.71 0.558861
Target:  5'- -uUGAGCgccgCGu--AGCUGCCGGGCu- -3'
miRNA:   3'- gcACUCGa---GCuuuUCGACGGCCUGug -5'
23246 5' -53.5 NC_005259.1 + 65327 0.72 0.484909
Target:  5'- --aGAGUUCGAugucGAGCUGCugugcgCGGGCACg -3'
miRNA:   3'- gcaCUCGAGCUu---UUCGACG------GCCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.