miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23247 3' -57.2 NC_005259.1 + 60571 0.68 0.581379
Target:  5'- cCGACggucaggCGGCCcACGGCGaGUCGGGUg -3'
miRNA:   3'- aGUUGa------GCUGG-UGCUGCaCGGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 60265 0.68 0.581379
Target:  5'- -aGGCU-GGCCACcaGCGcUGCCGGGCg -3'
miRNA:   3'- agUUGAgCUGGUGc-UGC-ACGGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 68858 0.68 0.570928
Target:  5'- aUCAugUCGACUugccCGcGCCGGGCg -3'
miRNA:   3'- -AGUugAGCUGGugcuGCaCGGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 28848 0.68 0.570928
Target:  5'- aCAAagUCGACCGCcccaccgaggGACGUuggGCCGGGUa -3'
miRNA:   3'- aGUUg-AGCUGGUG----------CUGCA---CGGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 62408 0.68 0.570928
Target:  5'- --uGCUCGACCACGGCacccGUaUCGGGUg -3'
miRNA:   3'- aguUGAGCUGGUGCUG----CAcGGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 13230 0.68 0.560525
Target:  5'- cUCGAC-CGGCCAC--CGUGa-GGGCCg -3'
miRNA:   3'- -AGUUGaGCUGGUGcuGCACggCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 18693 0.68 0.557414
Target:  5'- gUCuGCUUGAgCACGGCG-GUcugaccucgaucauCGGGCCg -3'
miRNA:   3'- -AGuUGAGCUgGUGCUGCaCG--------------GCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 45063 0.69 0.553273
Target:  5'- aCGACUUGACCAgugaacuguuggugcUGucgaGCGUGCCcguguagccggucGGGCCg -3'
miRNA:   3'- aGUUGAGCUGGU---------------GC----UGCACGG-------------CCCGG- -5'
23247 3' -57.2 NC_005259.1 + 47942 0.69 0.529657
Target:  5'- -aAGC-CGAUgACGGCgGUGCCGauGGCCg -3'
miRNA:   3'- agUUGaGCUGgUGCUG-CACGGC--CCGG- -5'
23247 3' -57.2 NC_005259.1 + 22977 0.69 0.529657
Target:  5'- gCAACUCGugCccgguguCGACGccGCCGaGGUCa -3'
miRNA:   3'- aGUUGAGCugGu------GCUGCa-CGGC-CCGG- -5'
23247 3' -57.2 NC_005259.1 + 48455 0.69 0.529657
Target:  5'- gCAGCgCGuuCCACcGCGcGCCGGGUCg -3'
miRNA:   3'- aGUUGaGCu-GGUGcUGCaCGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 50381 0.69 0.519504
Target:  5'- -aAACUCGGCC-C-ACGUGUCGcGGCUc -3'
miRNA:   3'- agUUGAGCUGGuGcUGCACGGC-CCGG- -5'
23247 3' -57.2 NC_005259.1 + 14729 0.69 0.509428
Target:  5'- --cGCUCGucGCCGaGAUGUacgcgcugGCCGGGCCg -3'
miRNA:   3'- aguUGAGC--UGGUgCUGCA--------CGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 67412 0.69 0.509428
Target:  5'- -gGGC-CGAcaCCAuCGGgGUGCCGGGCUc -3'
miRNA:   3'- agUUGaGCU--GGU-GCUgCACGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 68088 0.69 0.499435
Target:  5'- aUCAGCUCGaugGCCgggguaACGACGUaGuUCGGGUCg -3'
miRNA:   3'- -AGUUGAGC---UGG------UGCUGCA-C-GGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 42457 0.69 0.499435
Target:  5'- cCAACagucgcCGACUACGGCGagGCCcGGCCc -3'
miRNA:   3'- aGUUGa-----GCUGGUGCUGCa-CGGcCCGG- -5'
23247 3' -57.2 NC_005259.1 + 13003 0.69 0.499435
Target:  5'- uUCGcACUCGGCUACGcCGccGCCcGGCCc -3'
miRNA:   3'- -AGU-UGAGCUGGUGCuGCa-CGGcCCGG- -5'
23247 3' -57.2 NC_005259.1 + 27796 0.7 0.48953
Target:  5'- gUCA--UCGACCACGACGUGauacgagaCCuGGCUc -3'
miRNA:   3'- -AGUugAGCUGGUGCUGCAC--------GGcCCGG- -5'
23247 3' -57.2 NC_005259.1 + 33577 0.7 0.48953
Target:  5'- -gAACUUGACCGCGuCG---CGGGCCa -3'
miRNA:   3'- agUUGAGCUGGUGCuGCacgGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 68411 0.7 0.479718
Target:  5'- cCAACguaGACCuuGACGccucGCgCGGGCCg -3'
miRNA:   3'- aGUUGag-CUGGugCUGCa---CG-GCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.