miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23247 3' -57.2 NC_005259.1 + 14324 0.67 0.655173
Target:  5'- cUCGACgCcGCCGCccGCGUG-CGGGCCg -3'
miRNA:   3'- -AGUUGaGcUGGUGc-UGCACgGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 14638 0.67 0.632999
Target:  5'- aUCAAUUgcgUGACgAUGGCGUGggcucagcccgacUCGGGCCg -3'
miRNA:   3'- -AGUUGA---GCUGgUGCUGCAC-------------GGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 14729 0.69 0.509428
Target:  5'- --cGCUCGucGCCGaGAUGUacgcgcugGCCGGGCCg -3'
miRNA:   3'- aguUGAGC--UGGUgCUGCA--------CGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 17745 0.74 0.264975
Target:  5'- cUCGACgcgauccgugaGGCCGCcGCGcGCCGGGCCg -3'
miRNA:   3'- -AGUUGag---------CUGGUGcUGCaCGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 17823 0.75 0.24728
Target:  5'- cUCAGCgaGGCCAuCGACGgguggGCCGaGGCCa -3'
miRNA:   3'- -AGUUGagCUGGU-GCUGCa----CGGC-CCGG- -5'
23247 3' -57.2 NC_005259.1 + 18693 0.68 0.557414
Target:  5'- gUCuGCUUGAgCACGGCG-GUcugaccucgaucauCGGGCCg -3'
miRNA:   3'- -AGuUGAGCUgGUGCUGCaCG--------------GCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 19235 0.72 0.346016
Target:  5'- cCGAgUCGGCgAUGAuCGauggccgccUGCCGGGCCg -3'
miRNA:   3'- aGUUgAGCUGgUGCU-GC---------ACGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 22820 0.67 0.665708
Target:  5'- cCGAUgugUGACUGCGuCGUGCUGGcCCg -3'
miRNA:   3'- aGUUGa--GCUGGUGCuGCACGGCCcGG- -5'
23247 3' -57.2 NC_005259.1 + 22924 0.66 0.697098
Target:  5'- ---cCUCGugCuCGACcucGCCGGGUCa -3'
miRNA:   3'- aguuGAGCugGuGCUGca-CGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 22977 0.69 0.529657
Target:  5'- gCAACUCGugCccgguguCGACGccGCCGaGGUCa -3'
miRNA:   3'- aGUUGAGCugGu------GCUGCa-CGGC-CCGG- -5'
23247 3' -57.2 NC_005259.1 + 23647 0.68 0.591867
Target:  5'- uUCGGCccgcCGACgGCGACG-GCUGGaccGCCg -3'
miRNA:   3'- -AGUUGa---GCUGgUGCUGCaCGGCC---CGG- -5'
23247 3' -57.2 NC_005259.1 + 26254 0.71 0.39622
Target:  5'- cCAugUCGuagacggucuCCAUGAUGUcGCCGGuGCCg -3'
miRNA:   3'- aGUugAGCu---------GGUGCUGCA-CGGCC-CGG- -5'
23247 3' -57.2 NC_005259.1 + 27796 0.7 0.48953
Target:  5'- gUCA--UCGACCACGACGUGauacgagaCCuGGCUc -3'
miRNA:   3'- -AGUugAGCUGGUGCUGCAC--------GGcCCGG- -5'
23247 3' -57.2 NC_005259.1 + 28848 0.68 0.570928
Target:  5'- aCAAagUCGACCGCcccaccgaggGACGUuggGCCGGGUa -3'
miRNA:   3'- aGUUg-AGCUGGUG----------CUGCA---CGGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 30150 0.67 0.655173
Target:  5'- gCAGCUCGACCG-GGCc-GCCuacaGGCCg -3'
miRNA:   3'- aGUUGAGCUGGUgCUGcaCGGc---CCGG- -5'
23247 3' -57.2 NC_005259.1 + 32243 0.68 0.581379
Target:  5'- --uGCUCGAUgagauccaaCACGACGUGCaucgauGGGCa -3'
miRNA:   3'- aguUGAGCUG---------GUGCUGCACGg-----CCCGg -5'
23247 3' -57.2 NC_005259.1 + 32678 0.68 0.612931
Target:  5'- cCGACUCG-CaauCGuCGUaGCCGGGCg -3'
miRNA:   3'- aGUUGAGCuGgu-GCuGCA-CGGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 33435 0.67 0.627715
Target:  5'- gCGGCUCaagcucgcucgguguGACC-C-ACGUGCCGGGUg -3'
miRNA:   3'- aGUUGAG---------------CUGGuGcUGCACGGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 33577 0.7 0.48953
Target:  5'- -gAACUUGACCGCGuCG---CGGGCCa -3'
miRNA:   3'- agUUGAGCUGGUGCuGCacgGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 34611 0.75 0.234659
Target:  5'- aUC-ACUCGuCCGCGAUGUGCCagacgauGGGCg -3'
miRNA:   3'- -AGuUGAGCuGGUGCUGCACGG-------CCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.