miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23247 3' -57.2 NC_005259.1 + 562 0.66 0.707459
Target:  5'- -uGACcCGcACCACGGCGUGg-GGGUCg -3'
miRNA:   3'- agUUGaGC-UGGUGCUGCACggCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 1412 0.7 0.459434
Target:  5'- aCGACcCGAgCACGGCauacgucGUGCuCGGGCUg -3'
miRNA:   3'- aGUUGaGCUgGUGCUG-------CACG-GCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 3055 0.71 0.413966
Target:  5'- cCGACUacuACCGuCGACGgGCCGaGGCCg -3'
miRNA:   3'- aGUUGAgc-UGGU-GCUGCaCGGC-CCGG- -5'
23247 3' -57.2 NC_005259.1 + 3191 0.66 0.686679
Target:  5'- gUCggUgcgCGcACCACGAUGUG--GGGCCu -3'
miRNA:   3'- -AGuuGa--GC-UGGUGCUGCACggCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 3306 0.67 0.62349
Target:  5'- cUCGGCgagCGcuGCguCGACGUgagcGCCGGGCa -3'
miRNA:   3'- -AGUUGa--GC--UGguGCUGCA----CGGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 4318 0.66 0.697098
Target:  5'- -gAGCgCGACCAaccuCGUGCCGGaCCu -3'
miRNA:   3'- agUUGaGCUGGUgcu-GCACGGCCcGG- -5'
23247 3' -57.2 NC_005259.1 + 4695 0.71 0.432194
Target:  5'- aCAGCUCGGCCcCGugGUGCgaugacCGcGCCc -3'
miRNA:   3'- aGUUGAGCUGGuGCugCACG------GCcCGG- -5'
23247 3' -57.2 NC_005259.1 + 6309 0.66 0.686679
Target:  5'- -gAugUCGACggCAUGACcuaccuUGCCGGGCa -3'
miRNA:   3'- agUugAGCUG--GUGCUGc-----ACGGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 6559 0.73 0.322679
Target:  5'- -aAGCU-GugCGCGGCGUGUCaGGCCg -3'
miRNA:   3'- agUUGAgCugGUGCUGCACGGcCCGG- -5'
23247 3' -57.2 NC_005259.1 + 8381 0.75 0.24728
Target:  5'- cUCGGCaUCGgcgagaGCCuCGGCGaGCCGGGCCa -3'
miRNA:   3'- -AGUUG-AGC------UGGuGCUGCaCGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 8790 0.74 0.279588
Target:  5'- -gAGCUCGGCCcgcuugGCGAggaucuucuCGcGCCGGGCCg -3'
miRNA:   3'- agUUGAGCUGG------UGCU---------GCaCGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 8898 0.66 0.685635
Target:  5'- gUCAcGCUCGGCCugcUGACGgGCCgcguucuGGGCUc -3'
miRNA:   3'- -AGU-UGAGCUGGu--GCUGCaCGG-------CCCGG- -5'
23247 3' -57.2 NC_005259.1 + 9512 0.66 0.727966
Target:  5'- --cGCUCG-UCGCGcGCGUcgaccgccGCCGGGUCa -3'
miRNA:   3'- aguUGAGCuGGUGC-UGCA--------CGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 10213 0.66 0.707459
Target:  5'- gCAGCUCGACCACcacgagauGGCGcucacugagcacgGCggugugcuugaugagCGGGCCg -3'
miRNA:   3'- aGUUGAGCUGGUG--------CUGCa------------CG---------------GCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 10731 0.68 0.591867
Target:  5'- -gAugUCGgugaucACCGCG-CGcUGCCGGGCg -3'
miRNA:   3'- agUugAGC------UGGUGCuGC-ACGGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 11412 0.66 0.686679
Target:  5'- uUCGGCUCGugGCCggugcaACGGgGaUGCuUGGGCCg -3'
miRNA:   3'- -AGUUGAGC--UGG------UGCUgC-ACG-GCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 13003 0.69 0.499435
Target:  5'- uUCGcACUCGGCUACGcCGccGCCcGGCCc -3'
miRNA:   3'- -AGU-UGAGCUGGUGCuGCa-CGGcCCGG- -5'
23247 3' -57.2 NC_005259.1 + 13230 0.68 0.560525
Target:  5'- cUCGAC-CGGCCAC--CGUGa-GGGCCg -3'
miRNA:   3'- -AGUUGaGCUGGUGcuGCACggCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 13714 0.67 0.665708
Target:  5'- cUCGACacCGACaauCGAgGUGCCGugauGGCCc -3'
miRNA:   3'- -AGUUGa-GCUGgu-GCUgCACGGC----CCGG- -5'
23247 3' -57.2 NC_005259.1 + 14216 0.75 0.241201
Target:  5'- aUCAACUaccCGGCgCGCGuCGUGCguauCGGGCCg -3'
miRNA:   3'- -AGUUGA---GCUG-GUGCuGCACG----GCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.