miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23247 3' -57.2 NC_005259.1 + 9512 0.66 0.727966
Target:  5'- --cGCUCG-UCGCGcGCGUcgaccgccGCCGGGUCa -3'
miRNA:   3'- aguUGAGCuGGUGC-UGCA--------CGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 61929 0.74 0.293423
Target:  5'- gCAGCUCGGucucUCGCGcGgGUGCCGgGGCCa -3'
miRNA:   3'- aGUUGAGCU----GGUGC-UgCACGGC-CCGG- -5'
23247 3' -57.2 NC_005259.1 + 6559 0.73 0.322679
Target:  5'- -aAGCU-GugCGCGGCGUGUCaGGCCg -3'
miRNA:   3'- agUUGAgCugGUGCUGCACGGcCCGG- -5'
23247 3' -57.2 NC_005259.1 + 65685 0.73 0.338104
Target:  5'- --uACUCGGCC-CGACGaG-CGGGCCg -3'
miRNA:   3'- aguUGAGCUGGuGCUGCaCgGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 40430 0.72 0.343629
Target:  5'- gUCAACUCGagucuggugugugGCCugccggugugguUGACGUacuGCCGGGCCg -3'
miRNA:   3'- -AGUUGAGC-------------UGGu-----------GCUGCA---CGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 49536 0.72 0.346016
Target:  5'- cUCGAacgUGGCCACcucaGUGCCGGGCUg -3'
miRNA:   3'- -AGUUga-GCUGGUGcug-CACGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 19235 0.72 0.346016
Target:  5'- cCGAgUCGGCgAUGAuCGauggccgccUGCCGGGCCg -3'
miRNA:   3'- aGUUgAGCUGgUGCU-GC---------ACGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 51514 0.72 0.370537
Target:  5'- cCGAuCUCGACgCGCGugaccuCGUGCacgGGGCCg -3'
miRNA:   3'- aGUU-GAGCUG-GUGCu-----GCACGg--CCCGG- -5'
23247 3' -57.2 NC_005259.1 + 47900 0.72 0.387532
Target:  5'- gUCGGCUCGuugagcGCCuugAUGGCGUcGCCGaGGCCc -3'
miRNA:   3'- -AGUUGAGC------UGG---UGCUGCA-CGGC-CCGG- -5'
23247 3' -57.2 NC_005259.1 + 67224 0.74 0.283684
Target:  5'- gUCGAUgcCGACCACGGCGguguagggguugaGCgGGGCCu -3'
miRNA:   3'- -AGUUGa-GCUGGUGCUGCa------------CGgCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 8790 0.74 0.279588
Target:  5'- -gAGCUCGGCCcgcuugGCGAggaucuucuCGcGCCGGGCCg -3'
miRNA:   3'- agUUGAGCUGG------UGCU---------GCaCGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 17745 0.74 0.264975
Target:  5'- cUCGACgcgauccgugaGGCCGCcGCGcGCCGGGCCg -3'
miRNA:   3'- -AGUUGag---------CUGGUGcUGCaCGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 41410 0.82 0.086106
Target:  5'- --cGCUCGGggugcCCACGAUGUGCaCGGGCCg -3'
miRNA:   3'- aguUGAGCU-----GGUGCUGCACG-GCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 58558 0.8 0.11839
Target:  5'- aCGGCUCGGgcgguugggccggaUCGCGGCGcggcUGCCGGGCCg -3'
miRNA:   3'- aGUUGAGCU--------------GGUGCUGC----ACGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 45609 0.77 0.177614
Target:  5'- aCAGCUCGGUCuCGAUGcccGCCGGGCCg -3'
miRNA:   3'- aGUUGAGCUGGuGCUGCa--CGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 34611 0.75 0.234659
Target:  5'- aUC-ACUCGuCCGCGAUGUGCCagacgauGGGCg -3'
miRNA:   3'- -AGuUGAGCuGGUGCUGCACGG-------CCCGg -5'
23247 3' -57.2 NC_005259.1 + 14216 0.75 0.241201
Target:  5'- aUCAACUaccCGGCgCGCGuCGUGCguauCGGGCCg -3'
miRNA:   3'- -AGUUGA---GCUG-GUGCuGCACG----GCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 41841 0.75 0.241201
Target:  5'- aUCGGCUCGACCuCGACGgUGUcccacucgaCGGGCa -3'
miRNA:   3'- -AGUUGAGCUGGuGCUGC-ACG---------GCCCGg -5'
23247 3' -57.2 NC_005259.1 + 8381 0.75 0.24728
Target:  5'- cUCGGCaUCGgcgagaGCCuCGGCGaGCCGGGCCa -3'
miRNA:   3'- -AGUUG-AGC------UGGuGCUGCaCGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 17823 0.75 0.24728
Target:  5'- cUCAGCgaGGCCAuCGACGgguggGCCGaGGCCa -3'
miRNA:   3'- -AGUUGagCUGGU-GCUGCa----CGGC-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.