Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23247 | 3' | -57.2 | NC_005259.1 | + | 39343 | 1.12 | 0.000662 |
Target: 5'- gUCAACUCGACCACGACGUGCCGGGCCu -3' miRNA: 3'- -AGUUGAGCUGGUGCUGCACGGCCCGG- -5' |
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23247 | 3' | -57.2 | NC_005259.1 | + | 41410 | 0.82 | 0.086106 |
Target: 5'- --cGCUCGGggugcCCACGAUGUGCaCGGGCCg -3' miRNA: 3'- aguUGAGCU-----GGUGCUGCACG-GCCCGG- -5' |
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23247 | 3' | -57.2 | NC_005259.1 | + | 58558 | 0.8 | 0.11839 |
Target: 5'- aCGGCUCGGgcgguugggccggaUCGCGGCGcggcUGCCGGGCCg -3' miRNA: 3'- aGUUGAGCU--------------GGUGCUGC----ACGGCCCGG- -5' |
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23247 | 3' | -57.2 | NC_005259.1 | + | 45609 | 0.77 | 0.177614 |
Target: 5'- aCAGCUCGGUCuCGAUGcccGCCGGGCCg -3' miRNA: 3'- aGUUGAGCUGGuGCUGCa--CGGCCCGG- -5' |
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23247 | 3' | -57.2 | NC_005259.1 | + | 34611 | 0.75 | 0.234659 |
Target: 5'- aUC-ACUCGuCCGCGAUGUGCCagacgauGGGCg -3' miRNA: 3'- -AGuUGAGCuGGUGCUGCACGG-------CCCGg -5' |
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23247 | 3' | -57.2 | NC_005259.1 | + | 41841 | 0.75 | 0.241201 |
Target: 5'- aUCGGCUCGACCuCGACGgUGUcccacucgaCGGGCa -3' miRNA: 3'- -AGUUGAGCUGGuGCUGC-ACG---------GCCCGg -5' |
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23247 | 3' | -57.2 | NC_005259.1 | + | 14216 | 0.75 | 0.241201 |
Target: 5'- aUCAACUaccCGGCgCGCGuCGUGCguauCGGGCCg -3' miRNA: 3'- -AGUUGA---GCUG-GUGCuGCACG----GCCCGG- -5' |
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23247 | 3' | -57.2 | NC_005259.1 | + | 8381 | 0.75 | 0.24728 |
Target: 5'- cUCGGCaUCGgcgagaGCCuCGGCGaGCCGGGCCa -3' miRNA: 3'- -AGUUG-AGC------UGGuGCUGCaCGGCCCGG- -5' |
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23247 | 3' | -57.2 | NC_005259.1 | + | 17823 | 0.75 | 0.24728 |
Target: 5'- cUCAGCgaGGCCAuCGACGgguggGCCGaGGCCa -3' miRNA: 3'- -AGUUGagCUGGU-GCUGCa----CGGC-CCGG- -5' |
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23247 | 3' | -57.2 | NC_005259.1 | + | 17745 | 0.74 | 0.264975 |
Target: 5'- cUCGACgcgauccgugaGGCCGCcGCGcGCCGGGCCg -3' miRNA: 3'- -AGUUGag---------CUGGUGcUGCaCGGCCCGG- -5' |
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23247 | 3' | -57.2 | NC_005259.1 | + | 8790 | 0.74 | 0.279588 |
Target: 5'- -gAGCUCGGCCcgcuugGCGAggaucuucuCGcGCCGGGCCg -3' miRNA: 3'- agUUGAGCUGG------UGCU---------GCaCGGCCCGG- -5' |
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23247 | 3' | -57.2 | NC_005259.1 | + | 67224 | 0.74 | 0.283684 |
Target: 5'- gUCGAUgcCGACCACGGCGguguagggguugaGCgGGGCCu -3' miRNA: 3'- -AGUUGa-GCUGGUGCUGCa------------CGgCCCGG- -5' |
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23247 | 3' | -57.2 | NC_005259.1 | + | 61929 | 0.74 | 0.293423 |
Target: 5'- gCAGCUCGGucucUCGCGcGgGUGCCGgGGCCa -3' miRNA: 3'- aGUUGAGCU----GGUGC-UgCACGGC-CCGG- -5' |
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23247 | 3' | -57.2 | NC_005259.1 | + | 6559 | 0.73 | 0.322679 |
Target: 5'- -aAGCU-GugCGCGGCGUGUCaGGCCg -3' miRNA: 3'- agUUGAgCugGUGCUGCACGGcCCGG- -5' |
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23247 | 3' | -57.2 | NC_005259.1 | + | 65685 | 0.73 | 0.338104 |
Target: 5'- --uACUCGGCC-CGACGaG-CGGGCCg -3' miRNA: 3'- aguUGAGCUGGuGCUGCaCgGCCCGG- -5' |
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23247 | 3' | -57.2 | NC_005259.1 | + | 40430 | 0.72 | 0.343629 |
Target: 5'- gUCAACUCGagucuggugugugGCCugccggugugguUGACGUacuGCCGGGCCg -3' miRNA: 3'- -AGUUGAGC-------------UGGu-----------GCUGCA---CGGCCCGG- -5' |
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23247 | 3' | -57.2 | NC_005259.1 | + | 19235 | 0.72 | 0.346016 |
Target: 5'- cCGAgUCGGCgAUGAuCGauggccgccUGCCGGGCCg -3' miRNA: 3'- aGUUgAGCUGgUGCU-GC---------ACGGCCCGG- -5' |
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23247 | 3' | -57.2 | NC_005259.1 | + | 49536 | 0.72 | 0.346016 |
Target: 5'- cUCGAacgUGGCCACcucaGUGCCGGGCUg -3' miRNA: 3'- -AGUUga-GCUGGUGcug-CACGGCCCGG- -5' |
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23247 | 3' | -57.2 | NC_005259.1 | + | 51514 | 0.72 | 0.370537 |
Target: 5'- cCGAuCUCGACgCGCGugaccuCGUGCacgGGGCCg -3' miRNA: 3'- aGUU-GAGCUG-GUGCu-----GCACGg--CCCGG- -5' |
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23247 | 3' | -57.2 | NC_005259.1 | + | 47900 | 0.72 | 0.387532 |
Target: 5'- gUCGGCUCGuugagcGCCuugAUGGCGUcGCCGaGGCCc -3' miRNA: 3'- -AGUUGAGC------UGG---UGCUGCA-CGGC-CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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