miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23248 3' -61.2 NC_005259.1 + 35645 0.78 0.067959
Target:  5'- gCCGCUGCCGCuggCGAGgguGGCCaGCGCGGUg -3'
miRNA:   3'- -GGCGACGGCG---GCUC---UCGGaCGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 35876 0.7 0.259635
Target:  5'- aCCGCagccGCCGCCGAggcagaccacggcGAGCCauucugcguUGCGCGGg -3'
miRNA:   3'- -GGCGa---CGGCGGCU-------------CUCGG---------ACGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 36173 0.68 0.353907
Target:  5'- aCC-UUGCCgagGUCGAGAGCCUGCGuacUGAUg -3'
miRNA:   3'- -GGcGACGG---CGGCUCUCGGACGU---GCUA- -5'
23248 3' -61.2 NC_005259.1 + 36672 0.7 0.271269
Target:  5'- gCCGCcGCCGCCGGGGucuugaccguccucGCCcGC-CGAUg -3'
miRNA:   3'- -GGCGaCGGCGGCUCU--------------CGGaCGuGCUA- -5'
23248 3' -61.2 NC_005259.1 + 37217 0.69 0.279929
Target:  5'- gCCGCcGCCGCCGGGgcgcuGGCCcgUGC-CGGa -3'
miRNA:   3'- -GGCGaCGGCGGCUC-----UCGG--ACGuGCUa -5'
23248 3' -61.2 NC_005259.1 + 37252 0.66 0.45942
Target:  5'- -gGCUGCCGCCGuu-GCCagGCuuGAg -3'
miRNA:   3'- ggCGACGGCGGCucuCGGa-CGugCUa -5'
23248 3' -61.2 NC_005259.1 + 37655 0.68 0.330341
Target:  5'- aCCGCcGCCGCCGccGGuGCC-GcCACGGUu -3'
miRNA:   3'- -GGCGaCGGCGGC--UCuCGGaC-GUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 38726 0.73 0.170741
Target:  5'- aCCGCUGCCGCCGuaccGGcgguggcccgccgcaGGCCggugagcUGCGCGAUc -3'
miRNA:   3'- -GGCGACGGCGGC----UC---------------UCGG-------ACGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 38797 0.7 0.253973
Target:  5'- aCCGCUGCCGauGAGAucGCCcGCgcccGCGAUg -3'
miRNA:   3'- -GGCGACGGCggCUCU--CGGaCG----UGCUA- -5'
23248 3' -61.2 NC_005259.1 + 38952 1.07 0.000451
Target:  5'- gCCGCUGCCGCCGAGAGCCUGCACGAUg -3'
miRNA:   3'- -GGCGACGGCGGCUCUCGGACGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 39910 0.66 0.440663
Target:  5'- cCCGCcucgauCCGUCGAGGGCC-GCGuCGAg -3'
miRNA:   3'- -GGCGac----GGCGGCUCUCGGaCGU-GCUa -5'
23248 3' -61.2 NC_005259.1 + 40640 0.66 0.440663
Target:  5'- aUGCcGUCGCCGAGAaagucaugcucGCCgagcaGCGCGAg -3'
miRNA:   3'- gGCGaCGGCGGCUCU-----------CGGa----CGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 41404 0.66 0.458472
Target:  5'- gCGC-GCCGCuCGGGGuGCCcacgaugUGCACGGg -3'
miRNA:   3'- gGCGaCGGCG-GCUCU-CGG-------ACGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 43023 0.69 0.307951
Target:  5'- aCCGgcgaUGCCGCCGAGcaGGCCgccgaGCAgCGAa -3'
miRNA:   3'- -GGCg---ACGGCGGCUC--UCGGa----CGU-GCUa -5'
23248 3' -61.2 NC_005259.1 + 43885 0.68 0.345922
Target:  5'- gCGUUGCCGCCGAcauuGCCcGCGCc-- -3'
miRNA:   3'- gGCGACGGCGGCUcu--CGGaCGUGcua -5'
23248 3' -61.2 NC_005259.1 + 45004 0.66 0.468957
Target:  5'- aCCGCcGaCCGCCG-GGGCC-GCGCc-- -3'
miRNA:   3'- -GGCGaC-GGCGGCuCUCGGaCGUGcua -5'
23248 3' -61.2 NC_005259.1 + 45176 0.7 0.273248
Target:  5'- uUGUUGCgCGCCGAG-GUCaGCGCGGUg -3'
miRNA:   3'- gGCGACG-GCGGCUCuCGGaCGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 45321 0.67 0.395754
Target:  5'- -gGCcGCCGCCGAacugcguGGCCUGCGCc-- -3'
miRNA:   3'- ggCGaCGGCGGCUc------UCGGACGUGcua -5'
23248 3' -61.2 NC_005259.1 + 46240 0.71 0.217138
Target:  5'- uCgGCUGCCGCCugaGgcacgucgaccccgAGGGUCUGCGCGAg -3'
miRNA:   3'- -GgCGACGGCGG---C--------------UCUCGGACGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 46780 0.66 0.468957
Target:  5'- gCCGCgcccGCCggGCCGAacaccGAGCCUGCgaGCGc- -3'
miRNA:   3'- -GGCGa---CGG--CGGCU-----CUCGGACG--UGCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.