miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23248 3' -61.2 NC_005259.1 + 1374 0.66 0.449988
Target:  5'- gCCGC-GCCGCCcgcGAG-GCCcgcGCAUGAg -3'
miRNA:   3'- -GGCGaCGGCGG---CUCuCGGa--CGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 1842 0.74 0.133764
Target:  5'- gCCGCUGCCGCCGAGgccgagaaAGCCgccGcCGCGu- -3'
miRNA:   3'- -GGCGACGGCGGCUC--------UCGGa--C-GUGCua -5'
23248 3' -61.2 NC_005259.1 + 1879 0.66 0.422348
Target:  5'- uCCGUaagcagGCCGCCGAGA-UC-GCGCGAg -3'
miRNA:   3'- -GGCGa-----CGGCGGCUCUcGGaCGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 4600 0.67 0.387133
Target:  5'- aCCGCcauagGCaCGCUGucGGGCCggugGCGCGAg -3'
miRNA:   3'- -GGCGa----CG-GCGGCu-CUCGGa---CGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 5443 0.74 0.141036
Target:  5'- cCCGCUGCCGCCGAcAGaucGCAUGAg -3'
miRNA:   3'- -GGCGACGGCGGCUcUCggaCGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 8876 0.66 0.478594
Target:  5'- gCCGCacccacGCCGCCuGAGcgucacgcucGGCCUGCugACGGg -3'
miRNA:   3'- -GGCGa-----CGGCGG-CUC----------UCGGACG--UGCUa -5'
23248 3' -61.2 NC_005259.1 + 11450 0.69 0.315283
Target:  5'- cUCGCUGCCGCCG-GuGCCUaucgucucGCAgauCGAg -3'
miRNA:   3'- -GGCGACGGCGGCuCuCGGA--------CGU---GCUa -5'
23248 3' -61.2 NC_005259.1 + 14971 0.66 0.437887
Target:  5'- gCGCauucaagGCCGCCGGGuacaagacacagcaGGCCggGUACGAg -3'
miRNA:   3'- gGCGa------CGGCGGCUC--------------UCGGa-CGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 17755 0.66 0.468957
Target:  5'- uCCGUgagGCCGCCGcgcgccGGGCCgagcGCAcCGAg -3'
miRNA:   3'- -GGCGa--CGGCGGCu-----CUCGGa---CGU-GCUa -5'
23248 3' -61.2 NC_005259.1 + 18455 0.66 0.468957
Target:  5'- aCCGCgcacaCCGCCGGuccuGAGCCgUGCcCGAc -3'
miRNA:   3'- -GGCGac---GGCGGCU----CUCGG-ACGuGCUa -5'
23248 3' -61.2 NC_005259.1 + 18665 0.66 0.477626
Target:  5'- aUGCcGCCGCCcgaguacgucaucGAGGGUCUGCuuGAg -3'
miRNA:   3'- gGCGaCGGCGG-------------CUCUCGGACGugCUa -5'
23248 3' -61.2 NC_005259.1 + 23888 0.74 0.144806
Target:  5'- uCCGCUGCCGCCc-GAGCCgccGCGCc-- -3'
miRNA:   3'- -GGCGACGGCGGcuCUCGGa--CGUGcua -5'
23248 3' -61.2 NC_005259.1 + 24134 0.67 0.413364
Target:  5'- aCCGCcGCCGCCcugcucGCCgaguUGCGCGAUg -3'
miRNA:   3'- -GGCGaCGGCGGcucu--CGG----ACGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 24341 0.66 0.449988
Target:  5'- gCGCUGgccuaCCGCCGGGuGCUcGCACa-- -3'
miRNA:   3'- gGCGAC-----GGCGGCUCuCGGaCGUGcua -5'
23248 3' -61.2 NC_005259.1 + 26117 0.68 0.338066
Target:  5'- aCCGCcGCCGCCGGucGCCgGUcCGAc -3'
miRNA:   3'- -GGCGaCGGCGGCUcuCGGaCGuGCUa -5'
23248 3' -61.2 NC_005259.1 + 26564 0.69 0.315283
Target:  5'- gCUGUaGCCGCCGAGcacgaaCUUGCGCGAg -3'
miRNA:   3'- -GGCGaCGGCGGCUCuc----GGACGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 27523 0.66 0.45942
Target:  5'- uCCGCacacGCCGUCGAG-GCCccacgGCGgGAUg -3'
miRNA:   3'- -GGCGa---CGGCGGCUCuCGGa----CGUgCUA- -5'
23248 3' -61.2 NC_005259.1 + 30713 0.73 0.160823
Target:  5'- uUGUUGCCGCCGAcGcGCC-GCACGAg -3'
miRNA:   3'- gGCGACGGCGGCU-CuCGGaCGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 34446 0.66 0.422348
Target:  5'- -aGCUGCCGaCCGGGcAGCgUGuCGCuGAUg -3'
miRNA:   3'- ggCGACGGC-GGCUC-UCGgAC-GUG-CUA- -5'
23248 3' -61.2 NC_005259.1 + 35510 0.7 0.2478
Target:  5'- cCCGUUGCCGCCGcc-GCCggGCACa-- -3'
miRNA:   3'- -GGCGACGGCGGCucuCGGa-CGUGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.