miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23248 3' -61.2 NC_005259.1 + 8876 0.66 0.478594
Target:  5'- gCCGCacccacGCCGCCuGAGcgucacgcucGGCCUGCugACGGg -3'
miRNA:   3'- -GGCGa-----CGGCGG-CUC----------UCGGACG--UGCUa -5'
23248 3' -61.2 NC_005259.1 + 35876 0.7 0.259635
Target:  5'- aCCGCagccGCCGCCGAggcagaccacggcGAGCCauucugcguUGCGCGGg -3'
miRNA:   3'- -GGCGa---CGGCGGCU-------------CUCGG---------ACGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 36672 0.7 0.271269
Target:  5'- gCCGCcGCCGCCGGGGucuugaccguccucGCCcGC-CGAUg -3'
miRNA:   3'- -GGCGaCGGCGGCUCU--------------CGGaCGuGCUA- -5'
23248 3' -61.2 NC_005259.1 + 45176 0.7 0.273248
Target:  5'- uUGUUGCgCGCCGAG-GUCaGCGCGGUg -3'
miRNA:   3'- gGCGACG-GCGGCUCuCGGaCGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 37217 0.69 0.279929
Target:  5'- gCCGCcGCCGCCGGGgcgcuGGCCcgUGC-CGGa -3'
miRNA:   3'- -GGCGaCGGCGGCUC-----UCGG--ACGuGCUa -5'
23248 3' -61.2 NC_005259.1 + 48178 0.69 0.30075
Target:  5'- cCCGCcGCCGCCGGGuGUCggaccggGCAUGc- -3'
miRNA:   3'- -GGCGaCGGCGGCUCuCGGa------CGUGCua -5'
23248 3' -61.2 NC_005259.1 + 43023 0.69 0.307951
Target:  5'- aCCGgcgaUGCCGCCGAGcaGGCCgccgaGCAgCGAa -3'
miRNA:   3'- -GGCg---ACGGCGGCUC--UCGGa----CGU-GCUa -5'
23248 3' -61.2 NC_005259.1 + 11450 0.69 0.315283
Target:  5'- cUCGCUGCCGCCG-GuGCCUaucgucucGCAgauCGAg -3'
miRNA:   3'- -GGCGACGGCGGCuCuCGGA--------CGU---GCUa -5'
23248 3' -61.2 NC_005259.1 + 26564 0.69 0.315283
Target:  5'- gCUGUaGCCGCCGAGcacgaaCUUGCGCGAg -3'
miRNA:   3'- -GGCGaCGGCGGCUCuc----GGACGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 38797 0.7 0.253973
Target:  5'- aCCGCUGCCGauGAGAucGCCcGCgcccGCGAUg -3'
miRNA:   3'- -GGCGACGGCggCUCU--CGGaCG----UGCUA- -5'
23248 3' -61.2 NC_005259.1 + 35510 0.7 0.2478
Target:  5'- cCCGUUGCCGCCGcc-GCCggGCACa-- -3'
miRNA:   3'- -GGCGACGGCGGCucuCGGa-CGUGcua -5'
23248 3' -61.2 NC_005259.1 + 47832 0.7 0.241753
Target:  5'- aCCGCUGCCGCUGAcGGuGCgaGCuuuuCGAg -3'
miRNA:   3'- -GGCGACGGCGGCU-CU-CGgaCGu---GCUa -5'
23248 3' -61.2 NC_005259.1 + 35645 0.78 0.067959
Target:  5'- gCCGCUGCCGCuggCGAGgguGGCCaGCGCGGUg -3'
miRNA:   3'- -GGCGACGGCG---GCUC---UCGGaCGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 1842 0.74 0.133764
Target:  5'- gCCGCUGCCGCCGAGgccgagaaAGCCgccGcCGCGu- -3'
miRNA:   3'- -GGCGACGGCGGCUC--------UCGGa--C-GUGCua -5'
23248 3' -61.2 NC_005259.1 + 5443 0.74 0.141036
Target:  5'- cCCGCUGCCGCCGAcAGaucGCAUGAg -3'
miRNA:   3'- -GGCGACGGCGGCUcUCggaCGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 23888 0.74 0.144806
Target:  5'- uCCGCUGCCGCCc-GAGCCgccGCGCc-- -3'
miRNA:   3'- -GGCGACGGCGGcuCUCGGa--CGUGcua -5'
23248 3' -61.2 NC_005259.1 + 30713 0.73 0.160823
Target:  5'- uUGUUGCCGCCGAcGcGCC-GCACGAg -3'
miRNA:   3'- gGCGACGGCGGCU-CuCGGaCGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 38726 0.73 0.170741
Target:  5'- aCCGCUGCCGCCGuaccGGcgguggcccgccgcaGGCCggugagcUGCGCGAUc -3'
miRNA:   3'- -GGCGACGGCGGC----UC---------------UCGG-------ACGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 46240 0.71 0.217138
Target:  5'- uCgGCUGCCGCCugaGgcacgucgaccccgAGGGUCUGCGCGAg -3'
miRNA:   3'- -GgCGACGGCGG---C--------------UCUCGGACGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 46944 0.71 0.235243
Target:  5'- gCCGC-GCCGCCGAccgcguuGAGCUUGUugGc- -3'
miRNA:   3'- -GGCGaCGGCGGCU-------CUCGGACGugCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.