miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23248 5' -58.1 NC_005259.1 + 3292 0.66 0.610757
Target:  5'- -cGCCUcGCCgGucCCUCGgcGAGCGCu -3'
miRNA:   3'- uaUGGGaCGGgUc-GGAGCaaCUCGCG- -5'
23248 5' -58.1 NC_005259.1 + 43900 0.66 0.610757
Target:  5'- uUGCCC-GCgCCGGCUgaUCGaUGGGCaGCg -3'
miRNA:   3'- uAUGGGaCG-GGUCGG--AGCaACUCG-CG- -5'
23248 5' -58.1 NC_005259.1 + 49669 0.66 0.600001
Target:  5'- -cGCgCCUGCUCGGCCUgGUaGucggccucGCGCu -3'
miRNA:   3'- uaUG-GGACGGGUCGGAgCAaCu-------CGCG- -5'
23248 5' -58.1 NC_005259.1 + 24317 0.66 0.589272
Target:  5'- cUACCCgacaugGUCCGGCCUCac---GCGCu -3'
miRNA:   3'- uAUGGGa-----CGGGUCGGAGcaacuCGCG- -5'
23248 5' -58.1 NC_005259.1 + 4328 0.66 0.567925
Target:  5'- -aACCUcgUGCCgGaCCUCGUcgcggugaUGAGCGCc -3'
miRNA:   3'- uaUGGG--ACGGgUcGGAGCA--------ACUCGCG- -5'
23248 5' -58.1 NC_005259.1 + 58642 0.66 0.566863
Target:  5'- aGUGCCCaUGCCCucgcgguAGCC-CGgugcaccgGGGUGCa -3'
miRNA:   3'- -UAUGGG-ACGGG-------UCGGaGCaa------CUCGCG- -5'
23248 5' -58.1 NC_005259.1 + 29525 0.66 0.557323
Target:  5'- aAUGCCCU-CCCGGUCUCaucagcaaacUUGAcGCGCu -3'
miRNA:   3'- -UAUGGGAcGGGUCGGAGc---------AACU-CGCG- -5'
23248 5' -58.1 NC_005259.1 + 4281 0.67 0.550989
Target:  5'- cUGCgCUGCCacgagcacggaccggCGGCCcugCGaUGAGCGCg -3'
miRNA:   3'- uAUGgGACGG---------------GUCGGa--GCaACUCGCG- -5'
23248 5' -58.1 NC_005259.1 + 48541 0.67 0.546778
Target:  5'- -gGCgCUGUcgCCGGUCUUGUUGuacGCGCg -3'
miRNA:   3'- uaUGgGACG--GGUCGGAGCAACu--CGCG- -5'
23248 5' -58.1 NC_005259.1 + 21212 0.67 0.543627
Target:  5'- gGUGCCgaGCUCAuccgagccgaguacGCCUCGgc-AGCGCg -3'
miRNA:   3'- -UAUGGgaCGGGU--------------CGGAGCaacUCGCG- -5'
23248 5' -58.1 NC_005259.1 + 63142 0.67 0.536298
Target:  5'- -aGCCgCUGUCCucGCCcaCGUUGAGCaGCc -3'
miRNA:   3'- uaUGG-GACGGGu-CGGa-GCAACUCG-CG- -5'
23248 5' -58.1 NC_005259.1 + 46376 0.67 0.536298
Target:  5'- -cGCCCgGCCCcaucucacgcAGCCgcgCGgUGAGgGCa -3'
miRNA:   3'- uaUGGGaCGGG----------UCGGa--GCaACUCgCG- -5'
23248 5' -58.1 NC_005259.1 + 47883 0.67 0.536298
Target:  5'- -aGCUUgGCCgGGUcagcgucggCUCGUUGAGCGCc -3'
miRNA:   3'- uaUGGGaCGGgUCG---------GAGCAACUCGCG- -5'
23248 5' -58.1 NC_005259.1 + 64748 0.67 0.525889
Target:  5'- -cACCC-GCCCAccgcGCCUCGcgacgGuGCGCc -3'
miRNA:   3'- uaUGGGaCGGGU----CGGAGCaa---CuCGCG- -5'
23248 5' -58.1 NC_005259.1 + 6521 0.67 0.525889
Target:  5'- -cGCCgUGCgcgcgacaaCCGGCCUCGgggcGAGCGg -3'
miRNA:   3'- uaUGGgACG---------GGUCGGAGCaa--CUCGCg -5'
23248 5' -58.1 NC_005259.1 + 9543 0.67 0.515556
Target:  5'- -cACCggagagCUGCCCGGCCUCGacc-GCGUc -3'
miRNA:   3'- uaUGG------GACGGGUCGGAGCaacuCGCG- -5'
23248 5' -58.1 NC_005259.1 + 64799 0.67 0.515556
Target:  5'- -gGCUgugUGCCuCGGCCUCGgcggcaaUGAGCGUg -3'
miRNA:   3'- uaUGGg--ACGG-GUCGGAGCa------ACUCGCG- -5'
23248 5' -58.1 NC_005259.1 + 54536 0.67 0.515556
Target:  5'- aGUAUCCgGCCCAGCCacacaGaUUGAacuuGCGCg -3'
miRNA:   3'- -UAUGGGaCGGGUCGGag---C-AACU----CGCG- -5'
23248 5' -58.1 NC_005259.1 + 50485 0.67 0.515556
Target:  5'- -aACCCUGCUCgaugAGCCggUCGaugUGGGCGg -3'
miRNA:   3'- uaUGGGACGGG----UCGG--AGCa--ACUCGCg -5'
23248 5' -58.1 NC_005259.1 + 36727 0.67 0.509396
Target:  5'- -gACCCgccgcGCCC-GCCgggauacgugauccCGUUGAGCGUg -3'
miRNA:   3'- uaUGGGa----CGGGuCGGa-------------GCAACUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.