miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23249 5' -61.5 NC_005259.1 + 1141 0.66 0.452209
Target:  5'- cGCCCcaacaggaaGGaCCACCACcaugUUCGAUCCcGCCg -3'
miRNA:   3'- -UGGG---------CC-GGUGGUGu---GGGCUAGGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 15074 0.66 0.48055
Target:  5'- cACCCuGGCC-CUugAgCCGGUCaugcGCCg -3'
miRNA:   3'- -UGGG-CCGGuGGugUgGGCUAGga--CGG- -5'
23249 5' -61.5 NC_005259.1 + 36665 0.66 0.452209
Target:  5'- cGCCCucGCCGCCGcCGCCgGgGUCUUGaCCg -3'
miRNA:   3'- -UGGGc-CGGUGGU-GUGGgC-UAGGAC-GG- -5'
23249 5' -61.5 NC_005259.1 + 61378 0.66 0.471005
Target:  5'- cACCUGcuGCCA-CACGCCCGAUgCcGUCg -3'
miRNA:   3'- -UGGGC--CGGUgGUGUGGGCUAgGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 33233 0.66 0.471005
Target:  5'- -gCCGGUCACCGCguacguGCCaGAU-CUGCCc -3'
miRNA:   3'- ugGGCCGGUGGUG------UGGgCUAgGACGG- -5'
23249 5' -61.5 NC_005259.1 + 25954 0.66 0.452209
Target:  5'- uGCCCGGcCCGCCgACGCCugCGAUgagaCCgggcagcGCCg -3'
miRNA:   3'- -UGGGCC-GGUGG-UGUGG--GCUA----GGa------CGG- -5'
23249 5' -61.5 NC_005259.1 + 54538 0.66 0.48055
Target:  5'- uAUCCGGCCcaGCCACACagauUGAaCUUGCg -3'
miRNA:   3'- -UGGGCCGG--UGGUGUGg---GCUaGGACGg -5'
23249 5' -61.5 NC_005259.1 + 36970 0.66 0.471005
Target:  5'- cGCCuCGGCCcgcACCGCcgaacgucGCaCCGuUCUUGCCc -3'
miRNA:   3'- -UGG-GCCGG---UGGUG--------UG-GGCuAGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 67791 0.66 0.48055
Target:  5'- gACCUuguuGG-CACCGCgugcgagcuugaGCCCGAUCUUGUCc -3'
miRNA:   3'- -UGGG----CCgGUGGUG------------UGGGCUAGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 7037 0.66 0.48055
Target:  5'- cCCCGGCgggguuuuuCGuuGCGCgaGAUCCUGUCg -3'
miRNA:   3'- uGGGCCG---------GUggUGUGggCUAGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 68220 0.67 0.381419
Target:  5'- uGCUCGGUgGaCCACgACCUGG-CCUGCUc -3'
miRNA:   3'- -UGGGCCGgU-GGUG-UGGGCUaGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 53202 0.67 0.389857
Target:  5'- cCCCGGCgAUCAgauucgcguCGCCCGcgcCCUGCUu -3'
miRNA:   3'- uGGGCCGgUGGU---------GUGGGCua-GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 46237 0.67 0.390708
Target:  5'- aGCUCGGCUGCCGCcugaggcacgucgacCCCGAgggUCUGCg -3'
miRNA:   3'- -UGGGCCGGUGGUGu--------------GGGCUa--GGACGg -5'
23249 5' -61.5 NC_005259.1 + 64748 0.67 0.415893
Target:  5'- cACCCGcCCACCGCGCCucgcgaCGGUgC-GCCu -3'
miRNA:   3'- -UGGGCcGGUGGUGUGG------GCUAgGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 56110 0.67 0.398417
Target:  5'- cGCgUGGCCACCgaaacugugugcGCugCCGGUguaaaCCUGCg -3'
miRNA:   3'- -UGgGCCGGUGG------------UGugGGCUA-----GGACGg -5'
23249 5' -61.5 NC_005259.1 + 42480 0.67 0.398417
Target:  5'- gGCCCGGCCcguagaGCCGUgACCCG-UCCggcggugugGCCa -3'
miRNA:   3'- -UGGGCCGG------UGGUG-UGGGCuAGGa--------CGG- -5'
23249 5' -61.5 NC_005259.1 + 8406 0.67 0.415893
Target:  5'- aGCCgGGCCACCucgcuggcgaGCAUgCGAUgCUcguUGCCg -3'
miRNA:   3'- -UGGgCCGGUGG----------UGUGgGCUA-GG---ACGG- -5'
23249 5' -61.5 NC_005259.1 + 36044 0.67 0.424805
Target:  5'- aGCgaGGCCACC-CGCgCGAgcaccaCCUGCUg -3'
miRNA:   3'- -UGggCCGGUGGuGUGgGCUa-----GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 59689 0.67 0.415893
Target:  5'- -gCCGGaCCugCACACaCCGAgUCgUGUCc -3'
miRNA:   3'- ugGGCC-GGugGUGUG-GGCU-AGgACGG- -5'
23249 5' -61.5 NC_005259.1 + 25180 0.67 0.415893
Target:  5'- gACCCGuaCGCCGC-CgCCGAUCCcaCCg -3'
miRNA:   3'- -UGGGCcgGUGGUGuG-GGCUAGGacGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.