miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23249 5' -61.5 NC_005259.1 + 15043 0.66 0.471005
Target:  5'- -aCCGGCaggguGCCAUGgCCGAUaCCgugGCCa -3'
miRNA:   3'- ugGGCCGg----UGGUGUgGGCUA-GGa--CGG- -5'
23249 5' -61.5 NC_005259.1 + 33233 0.66 0.471005
Target:  5'- -gCCGGUCACCGCguacguGCCaGAU-CUGCCc -3'
miRNA:   3'- ugGGCCGGUGGUG------UGGgCUAgGACGG- -5'
23249 5' -61.5 NC_005259.1 + 41929 0.66 0.471005
Target:  5'- gACCCGGUagaACguCGCuuGGUUgugCUGCCg -3'
miRNA:   3'- -UGGGCCGg--UGguGUGggCUAG---GACGG- -5'
23249 5' -61.5 NC_005259.1 + 1141 0.66 0.452209
Target:  5'- cGCCCcaacaggaaGGaCCACCACcaugUUCGAUCCcGCCg -3'
miRNA:   3'- -UGGG---------CC-GGUGGUGu---GGGCUAGGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 10870 0.66 0.457805
Target:  5'- gAUCCGGCCAagcgcaugagcaGCACCCGGcCCcGUCg -3'
miRNA:   3'- -UGGGCCGGUgg----------UGUGGGCUaGGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 57961 0.66 0.490189
Target:  5'- gGCCCccauggucgaGGUCGCCGgGaucgugacCCCGGUCgaGCCa -3'
miRNA:   3'- -UGGG----------CCGGUGGUgU--------GGGCUAGgaCGG- -5'
23249 5' -61.5 NC_005259.1 + 6115 0.66 0.433831
Target:  5'- gGCCgaGGCCGCCGCuACgCGggCaCUGCa -3'
miRNA:   3'- -UGGg-CCGGUGGUG-UGgGCuaG-GACGg -5'
23249 5' -61.5 NC_005259.1 + 25954 0.66 0.452209
Target:  5'- uGCCCGGcCCGCCgACGCCugCGAUgagaCCgggcagcGCCg -3'
miRNA:   3'- -UGGGCC-GGUGG-UGUGG--GCUA----GGa------CGG- -5'
23249 5' -61.5 NC_005259.1 + 36665 0.66 0.452209
Target:  5'- cGCCCucGCCGCCGcCGCCgGgGUCUUGaCCg -3'
miRNA:   3'- -UGGGc-CGGUGGU-GUGGgC-UAGGAC-GG- -5'
23249 5' -61.5 NC_005259.1 + 17482 0.66 0.433831
Target:  5'- cGCCCGGCCAUgcgggCAaggacggcgaccUugCCGAUCCgaGCUc -3'
miRNA:   3'- -UGGGCCGGUG-----GU------------GugGGCUAGGa-CGG- -5'
23249 5' -61.5 NC_005259.1 + 21818 0.66 0.471005
Target:  5'- -gCCGGUCACCACACCaacaCCaGCa -3'
miRNA:   3'- ugGGCCGGUGGUGUGGgcuaGGaCGg -5'
23249 5' -61.5 NC_005259.1 + 36970 0.66 0.471005
Target:  5'- cGCCuCGGCCcgcACCGCcgaacgucGCaCCGuUCUUGCCc -3'
miRNA:   3'- -UGG-GCCGG---UGGUG--------UG-GGCuAGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 31551 0.66 0.432923
Target:  5'- cGCCUuguagGGUgccgcugCACCGCGCCUGAUCgUcGCCa -3'
miRNA:   3'- -UGGG-----CCG-------GUGGUGUGGGCUAGgA-CGG- -5'
23249 5' -61.5 NC_005259.1 + 57677 0.66 0.433831
Target:  5'- gUCCGGCCaaucgaccgugGCCAggUugCCGggCUUGCCc -3'
miRNA:   3'- uGGGCCGG-----------UGGU--GugGGCuaGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 60267 0.66 0.452209
Target:  5'- -gCUGGCCACCagcGCugCCGggCg-GCCa -3'
miRNA:   3'- ugGGCCGGUGG---UGugGGCuaGgaCGG- -5'
23249 5' -61.5 NC_005259.1 + 37829 0.66 0.442966
Target:  5'- gACCuCGG--GCCACACCUGcGUCgaGCCg -3'
miRNA:   3'- -UGG-GCCggUGGUGUGGGC-UAGgaCGG- -5'
23249 5' -61.5 NC_005259.1 + 67743 0.66 0.471005
Target:  5'- -aCCGGCgGCCACuaggccgcCCCGGccaCCgGCCa -3'
miRNA:   3'- ugGGCCGgUGGUGu-------GGGCUa--GGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 12161 0.66 0.461556
Target:  5'- cGCCgaCGG-CACCGCcCUCGGUcgaaCCUGCCg -3'
miRNA:   3'- -UGG--GCCgGUGGUGuGGGCUA----GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 53148 0.66 0.433831
Target:  5'- gACCaucaGCCGCUACGCcgaggCCGAUCUcGCCa -3'
miRNA:   3'- -UGGgc--CGGUGGUGUG-----GGCUAGGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 18442 0.66 0.442966
Target:  5'- cGCCuCGuGCaaCACCGCGCacaccgCCGGUCCUgaGCCg -3'
miRNA:   3'- -UGG-GC-CG--GUGGUGUG------GGCUAGGA--CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.