Results 1 - 20 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23249 | 5' | -61.5 | NC_005259.1 | + | 38042 | 1.11 | 0.000266 |
Target: 5'- uACCCGGCCACCACACCCGAUCCUGCCg -3' miRNA: 3'- -UGGGCCGGUGGUGUGGGCUAGGACGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 20161 | 0.81 | 0.045207 |
Target: 5'- uGCCCuGGCCACCGCGCCCGccgCCUcgGCUg -3' miRNA: 3'- -UGGG-CCGGUGGUGUGGGCua-GGA--CGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 48149 | 0.79 | 0.059485 |
Target: 5'- cCCCGGCCACCACcucGCCCGAaaccgCCcccGCCg -3' miRNA: 3'- uGGGCCGGUGGUG---UGGGCUa----GGa--CGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 17922 | 0.78 | 0.073967 |
Target: 5'- uGCCCGGUCuggACCGCGCCCGGugUCCacGCCu -3' miRNA: 3'- -UGGGCCGG---UGGUGUGGGCU--AGGa-CGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 33113 | 0.77 | 0.095313 |
Target: 5'- uGCCUGuagggccacgcggcaGCCGCCGCGCgUGAUCUUGCCg -3' miRNA: 3'- -UGGGC---------------CGGUGGUGUGgGCUAGGACGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 23896 | 0.76 | 0.11068 |
Target: 5'- cGCCCGaGCCGCCGCGCCCG--CC-GUCg -3' miRNA: 3'- -UGGGC-CGGUGGUGUGGGCuaGGaCGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 29933 | 0.74 | 0.133152 |
Target: 5'- cGCgUGGCCGCCACgcgGCCCGGUCgCgGCUg -3' miRNA: 3'- -UGgGCCGGUGGUG---UGGGCUAG-GaCGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 66755 | 0.74 | 0.136687 |
Target: 5'- uGCCCGGCCugC-CAgUCGAccgCCUGCUg -3' miRNA: 3'- -UGGGCCGGugGuGUgGGCUa--GGACGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 2958 | 0.74 | 0.140308 |
Target: 5'- gACCCuGGCCACCGCGCgCGAaaUCCUcuacGCg -3' miRNA: 3'- -UGGG-CCGGUGGUGUGgGCU--AGGA----CGg -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 14666 | 0.74 | 0.144016 |
Target: 5'- aGCCCgacucgGGCCGCgUGCACUCGAUUCUGCUc -3' miRNA: 3'- -UGGG------CCGGUG-GUGUGGGCUAGGACGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 66635 | 0.74 | 0.144016 |
Target: 5'- cCCUGGCCACCGC-UCgGAUUgCUGCCg -3' miRNA: 3'- uGGGCCGGUGGUGuGGgCUAG-GACGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 11836 | 0.73 | 0.159761 |
Target: 5'- uGCCa--CCGCCGCACuCCGA-CCUGCCa -3' miRNA: 3'- -UGGgccGGUGGUGUG-GGCUaGGACGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 8845 | 0.73 | 0.168203 |
Target: 5'- uGCgCCGaCCACCACagcguGCCCGccgCCUGCCg -3' miRNA: 3'- -UG-GGCcGGUGGUG-----UGGGCua-GGACGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 35536 | 0.73 | 0.168203 |
Target: 5'- cGCCCGccGUCGCCGaucCGCCCGAUgaCUUGCCg -3' miRNA: 3'- -UGGGC--CGGUGGU---GUGGGCUA--GGACGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 9968 | 0.73 | 0.172572 |
Target: 5'- cGCCCGaCCACCGCACCgguCGAgguggCCaGCCg -3' miRNA: 3'- -UGGGCcGGUGGUGUGG---GCUa----GGaCGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 60432 | 0.73 | 0.181615 |
Target: 5'- gGCCCacggGGCgGCCACGCCCGAcaccucgauUCCgacGCUg -3' miRNA: 3'- -UGGG----CCGgUGGUGUGGGCU---------AGGa--CGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 31294 | 0.73 | 0.181615 |
Target: 5'- uGCCCGGUCugCGCAa-CGAgCUUGCCg -3' miRNA: 3'- -UGGGCCGGugGUGUggGCUaGGACGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 39010 | 0.72 | 0.185819 |
Target: 5'- aGCgCGGUgACCAgACCCGAgauccguUCCUGCg -3' miRNA: 3'- -UGgGCCGgUGGUgUGGGCU-------AGGACGg -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 4697 | 0.72 | 0.190591 |
Target: 5'- aGCUCGGCCccguggugcgaugACCGCGCCCGAgaaagCCcGCa -3' miRNA: 3'- -UGGGCCGG-------------UGGUGUGGGCUa----GGaCGg -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 22843 | 0.72 | 0.195965 |
Target: 5'- gGCCCGGCCcacCCGCAgCCGcaaCCUGUa -3' miRNA: 3'- -UGGGCCGGu--GGUGUgGGCua-GGACGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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