miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23249 5' -61.5 NC_005259.1 + 1141 0.66 0.452209
Target:  5'- cGCCCcaacaggaaGGaCCACCACcaugUUCGAUCCcGCCg -3'
miRNA:   3'- -UGGG---------CC-GGUGGUGu---GGGCUAGGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 2958 0.74 0.140308
Target:  5'- gACCCuGGCCACCGCGCgCGAaaUCCUcuacGCg -3'
miRNA:   3'- -UGGG-CCGGUGGUGUGgGCU--AGGA----CGg -5'
23249 5' -61.5 NC_005259.1 + 4358 0.69 0.311113
Target:  5'- aGCgCCGGaCGgCACGCCCGugcCCUGCUc -3'
miRNA:   3'- -UG-GGCCgGUgGUGUGGGCua-GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 4409 0.69 0.296891
Target:  5'- aACUacgagGGCCGCCACcgcgcGCCCGAggUCgaGCCg -3'
miRNA:   3'- -UGGg----CCGGUGGUG-----UGGGCU--AGgaCGG- -5'
23249 5' -61.5 NC_005259.1 + 4697 0.72 0.190591
Target:  5'- aGCUCGGCCccguggugcgaugACCGCGCCCGAgaaagCCcGCa -3'
miRNA:   3'- -UGGGCCGG-------------UGGUGUGGGCUa----GGaCGg -5'
23249 5' -61.5 NC_005259.1 + 5415 0.7 0.28318
Target:  5'- cGCgCUGGCCGCCACgucgaggucugcGCCCG---CUGCCg -3'
miRNA:   3'- -UG-GGCCGGUGGUG------------UGGGCuagGACGG- -5'
23249 5' -61.5 NC_005259.1 + 6115 0.66 0.433831
Target:  5'- gGCCgaGGCCGCCGCuACgCGggCaCUGCa -3'
miRNA:   3'- -UGGg-CCGGUGGUG-UGgGCuaG-GACGg -5'
23249 5' -61.5 NC_005259.1 + 7037 0.66 0.48055
Target:  5'- cCCCGGCgggguuuuuCGuuGCGCgaGAUCCUGUCg -3'
miRNA:   3'- uGGGCCG---------GUggUGUGggCUAGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 7190 0.7 0.251103
Target:  5'- uGCCCGGCCugCggACGCaCCGGg-CUGCg -3'
miRNA:   3'- -UGGGCCGGugG--UGUG-GGCUagGACGg -5'
23249 5' -61.5 NC_005259.1 + 7275 0.67 0.424805
Target:  5'- uGCUCGGCUACCGC-CCCGccCCcaaGCa -3'
miRNA:   3'- -UGGGCCGGUGGUGuGGGCuaGGa--CGg -5'
23249 5' -61.5 NC_005259.1 + 8021 0.71 0.222081
Target:  5'- cCCCGGCgGCCAC-CCCGuuucgcgaacuGUCCgacaccGCCg -3'
miRNA:   3'- uGGGCCGgUGGUGuGGGC-----------UAGGa-----CGG- -5'
23249 5' -61.5 NC_005259.1 + 8164 0.72 0.211296
Target:  5'- gGCCaUGGCCugagGCUACcCCCGuggCCUGCCg -3'
miRNA:   3'- -UGG-GCCGG----UGGUGuGGGCua-GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 8406 0.67 0.415893
Target:  5'- aGCCgGGCCACCucgcuggcgaGCAUgCGAUgCUcguUGCCg -3'
miRNA:   3'- -UGGgCCGGUGG----------UGUGgGCUA-GG---ACGG- -5'
23249 5' -61.5 NC_005259.1 + 8845 0.73 0.168203
Target:  5'- uGCgCCGaCCACCACagcguGCCCGccgCCUGCCg -3'
miRNA:   3'- -UG-GGCcGGUGGUG-----UGGGCua-GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 8880 0.68 0.356845
Target:  5'- cACCCacGCCGCCugagcgucACGCUCGG-CCUGCUg -3'
miRNA:   3'- -UGGGc-CGGUGG--------UGUGGGCUaGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 9290 0.66 0.490189
Target:  5'- -gCgGuGCCGCCACGCUCG-UCCcguaGCCg -3'
miRNA:   3'- ugGgC-CGGUGGUGUGGGCuAGGa---CGG- -5'
23249 5' -61.5 NC_005259.1 + 9803 0.68 0.364912
Target:  5'- cGCUCGcGCCACUAcCGCCCGcaCC-GCCg -3'
miRNA:   3'- -UGGGC-CGGUGGU-GUGGGCuaGGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 9968 0.73 0.172572
Target:  5'- cGCCCGaCCACCGCACCgguCGAgguggCCaGCCg -3'
miRNA:   3'- -UGGGCcGGUGGUGUGG---GCUa----GGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 10870 0.66 0.457805
Target:  5'- gAUCCGGCCAagcgcaugagcaGCACCCGGcCCcGUCg -3'
miRNA:   3'- -UGGGCCGGUgg----------UGUGGGCUaGGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 11836 0.73 0.159761
Target:  5'- uGCCa--CCGCCGCACuCCGA-CCUGCCa -3'
miRNA:   3'- -UGGgccGGUGGUGUG-GGCUaGGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.