miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23249 5' -61.5 NC_005259.1 + 57961 0.66 0.490189
Target:  5'- gGCCCccauggucgaGGUCGCCGgGaucgugacCCCGGUCgaGCCa -3'
miRNA:   3'- -UGGG----------CCGGUGGUgU--------GGGCUAGgaCGG- -5'
23249 5' -61.5 NC_005259.1 + 8845 0.73 0.168203
Target:  5'- uGCgCCGaCCACCACagcguGCCCGccgCCUGCCg -3'
miRNA:   3'- -UG-GGCcGGUGGUG-----UGGGCua-GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 35536 0.73 0.168203
Target:  5'- cGCCCGccGUCGCCGaucCGCCCGAUgaCUUGCCg -3'
miRNA:   3'- -UGGGC--CGGUGGU---GUGGGCUA--GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 9968 0.73 0.172572
Target:  5'- cGCCCGaCCACCGCACCgguCGAgguggCCaGCCg -3'
miRNA:   3'- -UGGGCcGGUGGUGUGG---GCUa----GGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 31294 0.73 0.181615
Target:  5'- uGCCCGGUCugCGCAa-CGAgCUUGCCg -3'
miRNA:   3'- -UGGGCCGGugGUGUggGCUaGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 60432 0.73 0.181615
Target:  5'- gGCCCacggGGCgGCCACGCCCGAcaccucgauUCCgacGCUg -3'
miRNA:   3'- -UGGG----CCGgUGGUGUGGGCU---------AGGa--CGG- -5'
23249 5' -61.5 NC_005259.1 + 39010 0.72 0.185819
Target:  5'- aGCgCGGUgACCAgACCCGAgauccguUCCUGCg -3'
miRNA:   3'- -UGgGCCGgUGGUgUGGGCU-------AGGACGg -5'
23249 5' -61.5 NC_005259.1 + 4697 0.72 0.190591
Target:  5'- aGCUCGGCCccguggugcgaugACCGCGCCCGAgaaagCCcGCa -3'
miRNA:   3'- -UGGGCCGG-------------UGGUGUGGGCUa----GGaCGg -5'
23249 5' -61.5 NC_005259.1 + 22843 0.72 0.195965
Target:  5'- gGCCCGGCCcacCCGCAgCCGcaaCCUGUa -3'
miRNA:   3'- -UGGGCCGGu--GGUGUgGGCua-GGACGg -5'
23249 5' -61.5 NC_005259.1 + 11836 0.73 0.159761
Target:  5'- uGCCa--CCGCCGCACuCCGA-CCUGCCa -3'
miRNA:   3'- -UGGgccGGUGGUGUG-GGCUaGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 14666 0.74 0.144016
Target:  5'- aGCCCgacucgGGCCGCgUGCACUCGAUUCUGCUc -3'
miRNA:   3'- -UGGG------CCGGUG-GUGUGGGCUAGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 66635 0.74 0.144016
Target:  5'- cCCUGGCCACCGC-UCgGAUUgCUGCCg -3'
miRNA:   3'- uGGGCCGGUGGUGuGGgCUAG-GACGG- -5'
23249 5' -61.5 NC_005259.1 + 20161 0.81 0.045207
Target:  5'- uGCCCuGGCCACCGCGCCCGccgCCUcgGCUg -3'
miRNA:   3'- -UGGG-CCGGUGGUGUGGGCua-GGA--CGG- -5'
23249 5' -61.5 NC_005259.1 + 48149 0.79 0.059485
Target:  5'- cCCCGGCCACCACcucGCCCGAaaccgCCcccGCCg -3'
miRNA:   3'- uGGGCCGGUGGUG---UGGGCUa----GGa--CGG- -5'
23249 5' -61.5 NC_005259.1 + 17922 0.78 0.073967
Target:  5'- uGCCCGGUCuggACCGCGCCCGGugUCCacGCCu -3'
miRNA:   3'- -UGGGCCGG---UGGUGUGGGCU--AGGa-CGG- -5'
23249 5' -61.5 NC_005259.1 + 33113 0.77 0.095313
Target:  5'- uGCCUGuagggccacgcggcaGCCGCCGCGCgUGAUCUUGCCg -3'
miRNA:   3'- -UGGGC---------------CGGUGGUGUGgGCUAGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 23896 0.76 0.11068
Target:  5'- cGCCCGaGCCGCCGCGCCCG--CC-GUCg -3'
miRNA:   3'- -UGGGC-CGGUGGUGUGGGCuaGGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 29933 0.74 0.133152
Target:  5'- cGCgUGGCCGCCACgcgGCCCGGUCgCgGCUg -3'
miRNA:   3'- -UGgGCCGGUGGUG---UGGGCUAG-GaCGG- -5'
23249 5' -61.5 NC_005259.1 + 66755 0.74 0.136687
Target:  5'- uGCCCGGCCugC-CAgUCGAccgCCUGCUg -3'
miRNA:   3'- -UGGGCCGGugGuGUgGGCUa--GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 2958 0.74 0.140308
Target:  5'- gACCCuGGCCACCGCGCgCGAaaUCCUcuacGCg -3'
miRNA:   3'- -UGGG-CCGGUGGUGUGgGCU--AGGA----CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.