miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23249 5' -61.5 NC_005259.1 + 12161 0.66 0.461556
Target:  5'- cGCCgaCGG-CACCGCcCUCGGUcgaaCCUGCCg -3'
miRNA:   3'- -UGG--GCCgGUGGUGuGGGCUA----GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 13023 0.68 0.372279
Target:  5'- cGCCCGGCCccagcacGCCAacacguucgGCCCG-UUCUGCg -3'
miRNA:   3'- -UGGGCCGG-------UGGUg--------UGGGCuAGGACGg -5'
23249 5' -61.5 NC_005259.1 + 13083 0.68 0.348117
Target:  5'- gACCCGGCCauccgguGCCACcgacCCCGG-CCcGCUc -3'
miRNA:   3'- -UGGGCCGG-------UGGUGu---GGGCUaGGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 13152 0.67 0.381419
Target:  5'- gAUCaUGGCCACCAuccCGCCCGAgaCC-GCCc -3'
miRNA:   3'- -UGG-GCCGGUGGU---GUGGGCUa-GGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 13406 0.68 0.356845
Target:  5'- cGCUCGGCCuuCCugGCCgGGgucgCC-GCCg -3'
miRNA:   3'- -UGGGCCGGu-GGugUGGgCUa---GGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 14666 0.74 0.144016
Target:  5'- aGCCCgacucgGGCCGCgUGCACUCGAUUCUGCUc -3'
miRNA:   3'- -UGGG------CCGGUG-GUGUGGGCUAGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 14879 0.68 0.341091
Target:  5'- uGCCCGaGCCGCCGCcguaUGGUCaaGCCa -3'
miRNA:   3'- -UGGGC-CGGUGGUGugg-GCUAGgaCGG- -5'
23249 5' -61.5 NC_005259.1 + 15043 0.66 0.471005
Target:  5'- -aCCGGCaggguGCCAUGgCCGAUaCCgugGCCa -3'
miRNA:   3'- ugGGCCGg----UGGUGUgGGCUA-GGa--CGG- -5'
23249 5' -61.5 NC_005259.1 + 15074 0.66 0.48055
Target:  5'- cACCCuGGCC-CUugAgCCGGUCaugcGCCg -3'
miRNA:   3'- -UGGG-CCGGuGGugUgGGCUAGga--CGG- -5'
23249 5' -61.5 NC_005259.1 + 17122 0.66 0.490189
Target:  5'- cGCCCGauuCCAagGCACCCGucgaCCUGCg -3'
miRNA:   3'- -UGGGCc--GGUggUGUGGGCua--GGACGg -5'
23249 5' -61.5 NC_005259.1 + 17482 0.66 0.433831
Target:  5'- cGCCCGGCCAUgcgggCAaggacggcgaccUugCCGAUCCgaGCUc -3'
miRNA:   3'- -UGGGCCGGUG-----GU------------GugGGCUAGGa-CGG- -5'
23249 5' -61.5 NC_005259.1 + 17753 0.68 0.356845
Target:  5'- gAUCCgugaGGCCGCCGCGCgCCGggCCgaGCg -3'
miRNA:   3'- -UGGG----CCGGUGGUGUG-GGCuaGGa-CGg -5'
23249 5' -61.5 NC_005259.1 + 17922 0.78 0.073967
Target:  5'- uGCCCGGUCuggACCGCGCCCGGugUCCacGCCu -3'
miRNA:   3'- -UGGGCCGG---UGGUGUGGGCU--AGGa-CGG- -5'
23249 5' -61.5 NC_005259.1 + 18291 0.67 0.424805
Target:  5'- cGCCCGacgaGCCGCCGuucUGCCCGGUgugcgacaCCgagGCCg -3'
miRNA:   3'- -UGGGC----CGGUGGU---GUGGGCUA--------GGa--CGG- -5'
23249 5' -61.5 NC_005259.1 + 18442 0.66 0.442966
Target:  5'- cGCCuCGuGCaaCACCGCGCacaccgCCGGUCCUgaGCCg -3'
miRNA:   3'- -UGG-GC-CG--GUGGUGUG------GGCUAGGA--CGG- -5'
23249 5' -61.5 NC_005259.1 + 20161 0.81 0.045207
Target:  5'- uGCCCuGGCCACCGCGCCCGccgCCUcgGCUg -3'
miRNA:   3'- -UGGG-CCGGUGGUGUGGGCua-GGA--CGG- -5'
23249 5' -61.5 NC_005259.1 + 20423 0.68 0.341091
Target:  5'- uACCCGGUCACCgACGCCacagugcuccaCGA-CgaGCCg -3'
miRNA:   3'- -UGGGCCGGUGG-UGUGG-----------GCUaGgaCGG- -5'
23249 5' -61.5 NC_005259.1 + 21818 0.66 0.471005
Target:  5'- -gCCGGUCACCACACCaacaCCaGCa -3'
miRNA:   3'- ugGGCCGGUGGUGUGGgcuaGGaCGg -5'
23249 5' -61.5 NC_005259.1 + 22843 0.72 0.195965
Target:  5'- gGCCCGGCCcacCCGCAgCCGcaaCCUGUa -3'
miRNA:   3'- -UGGGCCGGu--GGUGUgGGCua-GGACGg -5'
23249 5' -61.5 NC_005259.1 + 23896 0.76 0.11068
Target:  5'- cGCCCGaGCCGCCGCGCCCG--CC-GUCg -3'
miRNA:   3'- -UGGGC-CGGUGGUGUGGGCuaGGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.