miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23250 5' -57.5 NC_005259.1 + 18301 0.67 0.641557
Target:  5'- gCCGCCGUUCugCCCg-GugUGCGa-- -3'
miRNA:   3'- -GGUGGCGAGugGGGagCugGUGCauc -5'
23250 5' -57.5 NC_005259.1 + 20168 0.73 0.306396
Target:  5'- gCCACCGCgccCGCCgCCUCGGCUgACG-AGa -3'
miRNA:   3'- -GGUGGCGa--GUGG-GGAGCUGG-UGCaUC- -5'
23250 5' -57.5 NC_005259.1 + 24675 0.73 0.328796
Target:  5'- aC-CCGUUCGCCauCCUCGugCACGUGc -3'
miRNA:   3'- gGuGGCGAGUGG--GGAGCugGUGCAUc -5'
23250 5' -57.5 NC_005259.1 + 24755 0.66 0.693938
Target:  5'- gCCGaggCGCUCAUcgaaUCCUCGACCACc--- -3'
miRNA:   3'- -GGUg--GCGAGUG----GGGAGCUGGUGcauc -5'
23250 5' -57.5 NC_005259.1 + 25087 0.68 0.558781
Target:  5'- aCCGCCGCUgcgccCGCCCCgagcaagggcaaggUCGACCccgccgaccuccccgACGUGa -3'
miRNA:   3'- -GGUGGCGA-----GUGGGG--------------AGCUGG---------------UGCAUc -5'
23250 5' -57.5 NC_005259.1 + 28983 0.72 0.368762
Target:  5'- -gGCCGCgagCGCCCgCUaCGGCCACG-AGa -3'
miRNA:   3'- ggUGGCGa--GUGGG-GA-GCUGGUGCaUC- -5'
23250 5' -57.5 NC_005259.1 + 30551 0.67 0.63102
Target:  5'- gCCACCgagcgguuGUUgACgCCCUUGGCCGCaGUAGc -3'
miRNA:   3'- -GGUGG--------CGAgUG-GGGAGCUGGUG-CAUC- -5'
23250 5' -57.5 NC_005259.1 + 31764 0.7 0.44864
Target:  5'- cCCACCGCcccgUCAUCgaugugcugcgCCUUGACCGCGUc- -3'
miRNA:   3'- -GGUGGCG----AGUGG-----------GGAGCUGGUGCAuc -5'
23250 5' -57.5 NC_005259.1 + 35873 0.7 0.458096
Target:  5'- uCCACCGCagcCGCCgCCgaggcaGACCACGgcGa -3'
miRNA:   3'- -GGUGGCGa--GUGG-GGag----CUGGUGCauC- -5'
23250 5' -57.5 NC_005259.1 + 37358 0.66 0.704289
Target:  5'- gCCGCUgugcgaguaGCUCACgCCCUCGgcaccgcccGCCGCGc-- -3'
miRNA:   3'- -GGUGG---------CGAGUG-GGGAGC---------UGGUGCauc -5'
23250 5' -57.5 NC_005259.1 + 37655 0.67 0.609959
Target:  5'- aCCGCCGC-CGCCgCCggugCcGCCACGg-- -3'
miRNA:   3'- -GGUGGCGaGUGG-GGa---GcUGGUGCauc -5'
23250 5' -57.5 NC_005259.1 + 37928 1.11 0.000752
Target:  5'- cCCACCGCUCACCCCUCGACCACGUAGa -3'
miRNA:   3'- -GGUGGCGAGUGGGGAGCUGGUGCAUC- -5'
23250 5' -57.5 NC_005259.1 + 39328 0.67 0.609959
Target:  5'- gCGCCGCUggugACCgucaaCUCGACCACGa-- -3'
miRNA:   3'- gGUGGCGAg---UGGg----GAGCUGGUGCauc -5'
23250 5' -57.5 NC_005259.1 + 39514 0.66 0.693938
Target:  5'- gCGCCGCUgGCCaCCagucCGGCCcaACGUGc -3'
miRNA:   3'- gGUGGCGAgUGG-GGa---GCUGG--UGCAUc -5'
23250 5' -57.5 NC_005259.1 + 39903 0.67 0.609959
Target:  5'- gCCGCCGCcCGCCUCgauccgUCGaggGCCGCGUcgAGg -3'
miRNA:   3'- -GGUGGCGaGUGGGG------AGC---UGGUGCA--UC- -5'
23250 5' -57.5 NC_005259.1 + 42218 0.67 0.620485
Target:  5'- cCCGCCGCgcCGCCguccccggccaUCUCGACCACc--- -3'
miRNA:   3'- -GGUGGCGa-GUGG-----------GGAGCUGGUGcauc -5'
23250 5' -57.5 NC_005259.1 + 43842 0.7 0.439292
Target:  5'- gCCGCCGCUCGCCaugCCgagCGcACC-CGUGa -3'
miRNA:   3'- -GGUGGCGAGUGG---GGa--GC-UGGuGCAUc -5'
23250 5' -57.5 NC_005259.1 + 44727 0.71 0.385655
Target:  5'- gCACCcgGCagCGCgCCCUCGACCGCGccgAGg -3'
miRNA:   3'- gGUGG--CGa-GUG-GGGAGCUGGUGCa--UC- -5'
23250 5' -57.5 NC_005259.1 + 45322 0.66 0.70119
Target:  5'- gCCGCCGCcgaacugcguggccUgCGCCgCCUgGGCCgccGCGUAGu -3'
miRNA:   3'- -GGUGGCG--------------A-GUGG-GGAgCUGG---UGCAUC- -5'
23250 5' -57.5 NC_005259.1 + 45652 0.7 0.439292
Target:  5'- gCCGCCGUgaaCACCgC-CGuCCGCGUAGu -3'
miRNA:   3'- -GGUGGCGa--GUGGgGaGCuGGUGCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.