Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23250 | 5' | -57.5 | NC_005259.1 | + | 771 | 0.7 | 0.439292 |
Target: 5'- uCCACCGCgccgaggcggCugCCCUCGGuuGgGUGGc -3' miRNA: 3'- -GGUGGCGa---------GugGGGAGCUggUgCAUC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 1191 | 0.66 | 0.662597 |
Target: 5'- -aGCCGCUCACCUgCUaCGACUGCa--- -3' miRNA: 3'- ggUGGCGAGUGGG-GA-GCUGGUGcauc -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 1366 | 0.66 | 0.693938 |
Target: 5'- -gGCCGCUCGCCgCgcCGcCCGCG-AGg -3' miRNA: 3'- ggUGGCGAGUGGgGa-GCuGGUGCaUC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 4422 | 0.66 | 0.683533 |
Target: 5'- gCCACCGCgCGCCCgaggUCGAgCCGCccgugcgaGUGGg -3' miRNA: 3'- -GGUGGCGaGUGGGg---AGCU-GGUG--------CAUC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 5397 | 0.66 | 0.683533 |
Target: 5'- aCCACCGUcgucaUCACCCgCgcuggCcGCCACGUcgAGg -3' miRNA: 3'- -GGUGGCG-----AGUGGG-Ga----GcUGGUGCA--UC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 5538 | 0.7 | 0.458096 |
Target: 5'- -gGCUGCUCucGCCCga-GGCCGCGUGGg -3' miRNA: 3'- ggUGGCGAG--UGGGgagCUGGUGCAUC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 6497 | 0.67 | 0.652085 |
Target: 5'- gUACUGCUgGCCCacaUCGACCGacgcCGUGc -3' miRNA: 3'- gGUGGCGAgUGGGg--AGCUGGU----GCAUc -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 6602 | 0.66 | 0.714575 |
Target: 5'- aCUACCGgaUCACCCCgUCGAUCAa---- -3' miRNA: 3'- -GGUGGCg-AGUGGGG-AGCUGGUgcauc -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 8056 | 0.66 | 0.673083 |
Target: 5'- aCCGCCGgUCGCCgCCgacaucgagaUCGuGCCGCGcUGGc -3' miRNA: 3'- -GGUGGCgAGUGG-GG----------AGC-UGGUGC-AUC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 9530 | 0.77 | 0.162428 |
Target: 5'- aCCGCCGCcgggUCACCggagagcugcccggCCUCGACCGCGUc- -3' miRNA: 3'- -GGUGGCG----AGUGG--------------GGAGCUGGUGCAuc -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 10063 | 0.67 | 0.609959 |
Target: 5'- aCGCCGgUUugCCCUCGcaggacGCCGacgaGUAGa -3' miRNA: 3'- gGUGGCgAGugGGGAGC------UGGUg---CAUC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 11679 | 0.68 | 0.57539 |
Target: 5'- gCCACCGCcucacuccaaaUCGCugaucucaagcauuCCCUgGGCCACGgcGa -3' miRNA: 3'- -GGUGGCG-----------AGUG--------------GGGAgCUGGUGCauC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 11840 | 0.67 | 0.628913 |
Target: 5'- aCCGCCGCacuccgaccugcCACCCgUCGGCgaACGUGa -3' miRNA: 3'- -GGUGGCGa-----------GUGGGgAGCUGg-UGCAUc -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 12345 | 0.66 | 0.6929 |
Target: 5'- aCCGCCGcCUCgaaaccgGCCUCgCGACCGagGUAGu -3' miRNA: 3'- -GGUGGC-GAG-------UGGGGaGCUGGUg-CAUC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 12509 | 0.68 | 0.588967 |
Target: 5'- -aGCCGCUgGgCCgCUCGGCUAccCGUAGa -3' miRNA: 3'- ggUGGCGAgUgGG-GAGCUGGU--GCAUC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 14190 | 0.7 | 0.439292 |
Target: 5'- -aACCGCUCACCCC-CGAgCAgGccgGGa -3' miRNA: 3'- ggUGGCGAGUGGGGaGCUgGUgCa--UC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 15300 | 0.66 | 0.683533 |
Target: 5'- aCCGCCGacCUCGCCgcccacggUCUCGACgGCGg-- -3' miRNA: 3'- -GGUGGC--GAGUGG--------GGAGCUGgUGCauc -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 17462 | 0.67 | 0.609959 |
Target: 5'- gCCACCGCcCACCguggugacgCC-CGGCCAUGcGGg -3' miRNA: 3'- -GGUGGCGaGUGG---------GGaGCUGGUGCaUC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 17588 | 0.68 | 0.568108 |
Target: 5'- gCUGCCGCgcaACCUCggcgCGAUgACGUGGg -3' miRNA: 3'- -GGUGGCGag-UGGGGa---GCUGgUGCAUC- -5' |
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23250 | 5' | -57.5 | NC_005259.1 | + | 17878 | 0.66 | 0.714575 |
Target: 5'- -aGCCGCUCgguuggACCCC-CGcACCGCGc-- -3' miRNA: 3'- ggUGGCGAG------UGGGGaGC-UGGUGCauc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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