miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23250 5' -57.5 NC_005259.1 + 37928 1.11 0.000752
Target:  5'- cCCACCGCUCACCCCUCGACCACGUAGa -3'
miRNA:   3'- -GGUGGCGAGUGGGGAGCUGGUGCAUC- -5'
23250 5' -57.5 NC_005259.1 + 46693 0.78 0.147365
Target:  5'- gCCGCCGCcgCGUCCCUCGACgCGCGUGc -3'
miRNA:   3'- -GGUGGCGa-GUGGGGAGCUG-GUGCAUc -5'
23250 5' -57.5 NC_005259.1 + 9530 0.77 0.162428
Target:  5'- aCCGCCGCcgggUCACCggagagcugcccggCCUCGACCGCGUc- -3'
miRNA:   3'- -GGUGGCG----AGUGG--------------GGAGCUGGUGCAuc -5'
23250 5' -57.5 NC_005259.1 + 62206 0.73 0.299193
Target:  5'- gUCACCGCUCACacgaggugCCUCGACCuCGg-- -3'
miRNA:   3'- -GGUGGCGAGUGg-------GGAGCUGGuGCauc -5'
23250 5' -57.5 NC_005259.1 + 20168 0.73 0.306396
Target:  5'- gCCACCGCgccCGCCgCCUCGGCUgACG-AGa -3'
miRNA:   3'- -GGUGGCGa--GUGG-GGAGCUGG-UGCaUC- -5'
23250 5' -57.5 NC_005259.1 + 62397 0.73 0.31373
Target:  5'- -aACCGCcCGCCUgCUCGACCACGg-- -3'
miRNA:   3'- ggUGGCGaGUGGG-GAGCUGGUGCauc -5'
23250 5' -57.5 NC_005259.1 + 24675 0.73 0.328796
Target:  5'- aC-CCGUUCGCCauCCUCGugCACGUGc -3'
miRNA:   3'- gGuGGCGAGUGG--GGAGCugGUGCAUc -5'
23250 5' -57.5 NC_005259.1 + 45681 0.72 0.358057
Target:  5'- aCCGCCuGCUCagGCCCUuacggaaccgcgagUUGAUCGCGUAGa -3'
miRNA:   3'- -GGUGG-CGAG--UGGGG--------------AGCUGGUGCAUC- -5'
23250 5' -57.5 NC_005259.1 + 56273 0.72 0.366272
Target:  5'- gCCGCCGCcCGgCCCguaucggcaccagcaGACCACGUGGc -3'
miRNA:   3'- -GGUGGCGaGUgGGGag-------------CUGGUGCAUC- -5'
23250 5' -57.5 NC_005259.1 + 28983 0.72 0.368762
Target:  5'- -gGCCGCgagCGCCCgCUaCGGCCACG-AGa -3'
miRNA:   3'- ggUGGCGa--GUGGG-GA-GCUGGUGCaUC- -5'
23250 5' -57.5 NC_005259.1 + 44727 0.71 0.385655
Target:  5'- gCACCcgGCagCGCgCCCUCGACCGCGccgAGg -3'
miRNA:   3'- gGUGG--CGa-GUG-GGGAGCUGGUGCa--UC- -5'
23250 5' -57.5 NC_005259.1 + 48024 0.71 0.386513
Target:  5'- gCACCGCgcccacgauguugacCACCCCggUGGCCACGgcGg -3'
miRNA:   3'- gGUGGCGa--------------GUGGGGa-GCUGGUGCauC- -5'
23250 5' -57.5 NC_005259.1 + 51742 0.71 0.411933
Target:  5'- gCCACCGC-CACgCUCUCGGCaGCGUu- -3'
miRNA:   3'- -GGUGGCGaGUG-GGGAGCUGgUGCAuc -5'
23250 5' -57.5 NC_005259.1 + 68736 0.7 0.430057
Target:  5'- gUCGCCGCUUGCCgagCUCGACCcCGgcGa -3'
miRNA:   3'- -GGUGGCGAGUGGg--GAGCUGGuGCauC- -5'
23250 5' -57.5 NC_005259.1 + 45652 0.7 0.439292
Target:  5'- gCCGCCGUgaaCACCgC-CGuCCGCGUAGu -3'
miRNA:   3'- -GGUGGCGa--GUGGgGaGCuGGUGCAUC- -5'
23250 5' -57.5 NC_005259.1 + 43842 0.7 0.439292
Target:  5'- gCCGCCGCUCGCCaugCCgagCGcACC-CGUGa -3'
miRNA:   3'- -GGUGGCGAGUGG---GGa--GC-UGGuGCAUc -5'
23250 5' -57.5 NC_005259.1 + 14190 0.7 0.439292
Target:  5'- -aACCGCUCACCCC-CGAgCAgGccgGGa -3'
miRNA:   3'- ggUGGCGAGUGGGGaGCUgGUgCa--UC- -5'
23250 5' -57.5 NC_005259.1 + 771 0.7 0.439292
Target:  5'- uCCACCGCgccgaggcggCugCCCUCGGuuGgGUGGc -3'
miRNA:   3'- -GGUGGCGa---------GugGGGAGCUggUgCAUC- -5'
23250 5' -57.5 NC_005259.1 + 31764 0.7 0.44864
Target:  5'- cCCACCGCcccgUCAUCgaugugcugcgCCUUGACCGCGUc- -3'
miRNA:   3'- -GGUGGCG----AGUGG-----------GGAGCUGGUGCAuc -5'
23250 5' -57.5 NC_005259.1 + 35873 0.7 0.458096
Target:  5'- uCCACCGCagcCGCCgCCgaggcaGACCACGgcGa -3'
miRNA:   3'- -GGUGGCGa--GUGG-GGag----CUGGUGCauC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.