miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23251 5' -60 NC_005259.1 + 1369 0.68 0.40792
Target:  5'- cGCUcGCCGCGCCGCCc---GCgaGGCCc -3'
miRNA:   3'- -CGAcCGGUGCGGCGGcaacCGa-CUGG- -5'
23251 5' -60 NC_005259.1 + 1634 0.66 0.552248
Target:  5'- aCUGGCCAUGCC-CUacuacgGGUgGACCg -3'
miRNA:   3'- cGACCGGUGCGGcGGcaa---CCGaCUGG- -5'
23251 5' -60 NC_005259.1 + 2154 0.7 0.318272
Target:  5'- uGCUGGCCAgcggcgucgaGCCGCCGguugccgaGGUcaugGGCCg -3'
miRNA:   3'- -CGACCGGUg---------CGGCGGCaa------CCGa---CUGG- -5'
23251 5' -60 NC_005259.1 + 3906 0.66 0.552248
Target:  5'- ---cGCCAUGCUGCCGUaccugaaccccGGCgaGACCg -3'
miRNA:   3'- cgacCGGUGCGGCGGCAa----------CCGa-CUGG- -5'
23251 5' -60 NC_005259.1 + 4173 0.67 0.463024
Target:  5'- -aUGGUCACGCUGCUGc--GCgaGACCa -3'
miRNA:   3'- cgACCGGUGCGGCGGCaacCGa-CUGG- -5'
23251 5' -60 NC_005259.1 + 6944 0.69 0.362798
Target:  5'- --aGGCCGagcuCGCCGCCGacGGCauccacacccucgaUGACCu -3'
miRNA:   3'- cgaCCGGU----GCGGCGGCaaCCG--------------ACUGG- -5'
23251 5' -60 NC_005259.1 + 8083 0.66 0.561494
Target:  5'- --cGuGCCGCGCUGgCGUgaccgugcgauccUGGCaGACCc -3'
miRNA:   3'- cgaC-CGGUGCGGCgGCA-------------ACCGaCUGG- -5'
23251 5' -60 NC_005259.1 + 13011 0.69 0.349077
Target:  5'- --cGGCUACGCCGCCGcccGGCc--CCa -3'
miRNA:   3'- cgaCCGGUGCGGCGGCaa-CCGacuGG- -5'
23251 5' -60 NC_005259.1 + 13417 0.76 0.138261
Target:  5'- cCUGGCCGggguCGCCGCCGgggccgcgcuaGGCgUGACCg -3'
miRNA:   3'- cGACCGGU----GCGGCGGCaa---------CCG-ACUGG- -5'
23251 5' -60 NC_005259.1 + 14315 0.68 0.443282
Target:  5'- -aUGGCCgcccucgACGCCGCCGcccGCgugcgGGCCg -3'
miRNA:   3'- cgACCGG-------UGCGGCGGCaacCGa----CUGG- -5'
23251 5' -60 NC_005259.1 + 14876 0.67 0.453565
Target:  5'- cGCUGcCCGagcCGCCGCCGUaUGGUcaaGCCa -3'
miRNA:   3'- -CGACcGGU---GCGGCGGCA-ACCGac-UGG- -5'
23251 5' -60 NC_005259.1 + 16644 0.74 0.166963
Target:  5'- --cGGCgACGCCGCCGacaauuucgGGgUGACCg -3'
miRNA:   3'- cgaCCGgUGCGGCGGCaa-------CCgACUGG- -5'
23251 5' -60 NC_005259.1 + 19253 0.67 0.452625
Target:  5'- -aUGGCCGCcugccggGCCGcCCGaUGGaagucaUGACCa -3'
miRNA:   3'- cgACCGGUG-------CGGC-GGCaACCg-----ACUGG- -5'
23251 5' -60 NC_005259.1 + 20105 0.67 0.481277
Target:  5'- -gUGGUgA-GCCGCCGUcucaaggccgcacUGGCUG-CCg -3'
miRNA:   3'- cgACCGgUgCGGCGGCA-------------ACCGACuGG- -5'
23251 5' -60 NC_005259.1 + 20164 0.76 0.135009
Target:  5'- cCUGGCCAccgcgccCGCCGCCuc-GGCUGACg -3'
miRNA:   3'- cGACCGGU-------GCGGCGGcaaCCGACUGg -5'
23251 5' -60 NC_005259.1 + 22209 0.7 0.341181
Target:  5'- cGUUGGCCACcgcgcaCCGCCGcgaGGCUGucgguuuCCg -3'
miRNA:   3'- -CGACCGGUGc-----GGCGGCaa-CCGACu------GG- -5'
23251 5' -60 NC_005259.1 + 23649 0.67 0.501847
Target:  5'- --cGGCC-CGCCGaCGgcgacGGCUGgACCg -3'
miRNA:   3'- cgaCCGGuGCGGCgGCaa---CCGAC-UGG- -5'
23251 5' -60 NC_005259.1 + 25916 0.66 0.531874
Target:  5'- cCUGaGCCGcCGCCGCCGguccggUGaGCgcacGCCg -3'
miRNA:   3'- cGAC-CGGU-GCGGCGGCa-----AC-CGac--UGG- -5'
23251 5' -60 NC_005259.1 + 26035 0.82 0.049433
Target:  5'- gGUUGGCCagcaGCGCCGCCG--GGUUGGCCa -3'
miRNA:   3'- -CGACCGG----UGCGGCGGCaaCCGACUGG- -5'
23251 5' -60 NC_005259.1 + 26132 0.66 0.542029
Target:  5'- cGCcGGuCCgACGCCGCCGa-GGCcGAgCa -3'
miRNA:   3'- -CGaCC-GG-UGCGGCGGCaaCCGaCUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.