miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23251 5' -60 NC_005259.1 + 53715 0.66 0.562524
Target:  5'- -gUGGucaCCGCGCCGCUGaUGGUgaUGucGCCg -3'
miRNA:   3'- cgACC---GGUGCGGCGGCaACCG--AC--UGG- -5'
23251 5' -60 NC_005259.1 + 44515 0.72 0.232451
Target:  5'- cCUGGCCacccACGCCGCCGcccGGCaGuCCa -3'
miRNA:   3'- cGACCGG----UGCGGCGGCaa-CCGaCuGG- -5'
23251 5' -60 NC_005259.1 + 55592 0.72 0.250355
Target:  5'- cGCUGGCCACGCgauaccacgucuCGCgCGccUUGGCcggGAUCa -3'
miRNA:   3'- -CGACCGGUGCG------------GCG-GC--AACCGa--CUGG- -5'
23251 5' -60 NC_005259.1 + 35637 0.71 0.282702
Target:  5'- --gGGCCGCcgccGCUGCCGcUGGCgagggUGGCCa -3'
miRNA:   3'- cgaCCGGUG----CGGCGGCaACCG-----ACUGG- -5'
23251 5' -60 NC_005259.1 + 26779 0.71 0.282702
Target:  5'- cGCcgGuGCCucggaacaccaGCGCCGCCGcccGGUUGGCCg -3'
miRNA:   3'- -CGa-C-CGG-----------UGCGGCGGCaa-CCGACUGG- -5'
23251 5' -60 NC_005259.1 + 55914 0.71 0.29654
Target:  5'- cGCUGGCCAgaCCGCUGgucugcucGGCgaGACCg -3'
miRNA:   3'- -CGACCGGUgcGGCGGCaa------CCGa-CUGG- -5'
23251 5' -60 NC_005259.1 + 35503 0.7 0.310897
Target:  5'- gGUUGGCCccguugcCGCCGCCGccgGGCacACCg -3'
miRNA:   3'- -CGACCGGu------GCGGCGGCaa-CCGacUGG- -5'
23251 5' -60 NC_005259.1 + 2154 0.7 0.318272
Target:  5'- uGCUGGCCAgcggcgucgaGCCGCCGguugccgaGGUcaugGGCCg -3'
miRNA:   3'- -CGACCGGUg---------CGGCGGCaa------CCGa---CUGG- -5'
23251 5' -60 NC_005259.1 + 38676 0.7 0.318272
Target:  5'- cGCUG--UugGCCGCCGggucgaGGUUGGCCa -3'
miRNA:   3'- -CGACcgGugCGGCGGCaa----CCGACUGG- -5'
23251 5' -60 NC_005259.1 + 45512 0.73 0.208154
Target:  5'- -gUGGCCACcgcgccgguguugGCCGCCG-UGGCUGcgagcggguugcucGCCg -3'
miRNA:   3'- cgACCGGUG-------------CGGCGGCaACCGAC--------------UGG- -5'
23251 5' -60 NC_005259.1 + 42216 0.73 0.205016
Target:  5'- uGCccGCCGCGCCGCCGUccccGGCcaucucGACCa -3'
miRNA:   3'- -CGacCGGUGCGGCGGCAa---CCGa-----CUGG- -5'
23251 5' -60 NC_005259.1 + 44057 0.74 0.18043
Target:  5'- --cGGCUcgaguGCGCUGUCGUugagcuucUGGCUGACCu -3'
miRNA:   3'- cgaCCGG-----UGCGGCGGCA--------ACCGACUGG- -5'
23251 5' -60 NC_005259.1 + 26035 0.82 0.049433
Target:  5'- gGUUGGCCagcaGCGCCGCCG--GGUUGGCCa -3'
miRNA:   3'- -CGACCGG----UGCGGCGGCaaCCGACUGG- -5'
23251 5' -60 NC_005259.1 + 46969 0.81 0.060008
Target:  5'- uGUUGGCCACGCCGCCGaUGaucgGGCCg -3'
miRNA:   3'- -CGACCGGUGCGGCGGCaACcga-CUGG- -5'
23251 5' -60 NC_005259.1 + 60266 0.77 0.112331
Target:  5'- gGCUGGCCaccaGCGCUGCCG--GGC-GGCCa -3'
miRNA:   3'- -CGACCGG----UGCGGCGGCaaCCGaCUGG- -5'
23251 5' -60 NC_005259.1 + 37233 0.77 0.11851
Target:  5'- cGCUGGCCcgugccggauugGCuGCCGCCGUUgccaGGCUugaGGCCg -3'
miRNA:   3'- -CGACCGG------------UG-CGGCGGCAA----CCGA---CUGG- -5'
23251 5' -60 NC_005259.1 + 20164 0.76 0.135009
Target:  5'- cCUGGCCAccgcgccCGCCGCCuc-GGCUGACg -3'
miRNA:   3'- cGACCGGU-------GCGGCGGcaaCCGACUGg -5'
23251 5' -60 NC_005259.1 + 13417 0.76 0.138261
Target:  5'- cCUGGCCGggguCGCCGCCGgggccgcgcuaGGCgUGACCg -3'
miRNA:   3'- cGACCGGU----GCGGCGGCaa---------CCG-ACUGG- -5'
23251 5' -60 NC_005259.1 + 42661 0.75 0.154405
Target:  5'- gGC-GGCCACGCggcUGCUGUUGGCgaucucGACCc -3'
miRNA:   3'- -CGaCCGGUGCG---GCGGCAACCGa-----CUGG- -5'
23251 5' -60 NC_005259.1 + 16644 0.74 0.166963
Target:  5'- --cGGCgACGCCGCCGacaauuucgGGgUGACCg -3'
miRNA:   3'- cgaCCGgUGCGGCGGCaa-------CCgACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.