miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23252 5' -66.6 NC_005259.1 + 5524 0.68 0.202352
Target:  5'- cGCCCGCaagcugugGCUGCUcuCGCccGAGGCCgCGUGGg -3'
miRNA:   3'- -CGGGCG--------CGGCGG--GCG--UUCCGG-GCGCU- -5'
23252 5' -66.6 NC_005259.1 + 52189 0.68 0.192711
Target:  5'- -aCCGCGCCGacaaCGCAcggcucauGGGCaCCGCGu -3'
miRNA:   3'- cgGGCGCGGCgg--GCGU--------UCCG-GGCGCu -5'
23252 5' -66.6 NC_005259.1 + 46921 0.68 0.188043
Target:  5'- cGCgUGCGCCGCCgaGCuu-GCCCGCc- -3'
miRNA:   3'- -CGgGCGCGGCGGg-CGuucCGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 52672 0.68 0.183475
Target:  5'- uGCCCGUucauGCCGguCCUGCAAGGCUa-CGAg -3'
miRNA:   3'- -CGGGCG----CGGC--GGGCGUUCCGGgcGCU- -5'
23252 5' -66.6 NC_005259.1 + 36713 0.69 0.179006
Target:  5'- aGCUCGUGCCGCucgacCCGCcgcGCCCGCc- -3'
miRNA:   3'- -CGGGCGCGGCG-----GGCGuucCGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 24849 0.69 0.179006
Target:  5'- aGUCCGUG-CGCUaCGcCGAGGCCCGCc- -3'
miRNA:   3'- -CGGGCGCgGCGG-GC-GUUCCGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 7576 0.69 0.178564
Target:  5'- cGUUCGCGCCGCcgCCGCcgaccucAAGGUCgGUGAc -3'
miRNA:   3'- -CGGGCGCGGCG--GGCG-------UUCCGGgCGCU- -5'
23252 5' -66.6 NC_005259.1 + 15744 0.69 0.174632
Target:  5'- uUCCuCGCCGCCUaCGAGGCCgGgGAg -3'
miRNA:   3'- cGGGcGCGGCGGGcGUUCCGGgCgCU- -5'
23252 5' -66.6 NC_005259.1 + 54859 0.69 0.174632
Target:  5'- gGCCCGCuGCCcgaggauUCCGCAcagcAGGCCacCGCGAa -3'
miRNA:   3'- -CGGGCG-CGGc------GGGCGU----UCCGG--GCGCU- -5'
23252 5' -66.6 NC_005259.1 + 37217 0.69 0.174632
Target:  5'- -gCCGcCGCCGCCggggCGCu-GGCCCGUGc -3'
miRNA:   3'- cgGGC-GCGGCGG----GCGuuCCGGGCGCu -5'
23252 5' -66.6 NC_005259.1 + 35087 0.69 0.172055
Target:  5'- gGCCugCGCaguccacaagcaguuGCCGCCCGUu-GGCCCgGCGGu -3'
miRNA:   3'- -CGG--GCG---------------CGGCGGGCGuuCCGGG-CGCU- -5'
23252 5' -66.6 NC_005259.1 + 7417 0.69 0.16208
Target:  5'- cCUCGuCGCCGUCgGCGGuGCCCGCGc -3'
miRNA:   3'- cGGGC-GCGGCGGgCGUUcCGGGCGCu -5'
23252 5' -66.6 NC_005259.1 + 13942 0.69 0.16208
Target:  5'- cGCCaaauCGaCGCCGgaccauCCCGgcauccCGAGGCCCGCGAu -3'
miRNA:   3'- -CGG----GC-GCGGC------GGGC------GUUCCGGGCGCU- -5'
23252 5' -66.6 NC_005259.1 + 3283 0.69 0.16208
Target:  5'- uCCCGuCGCCGCCuCGCc-GGUCCcucgGCGAg -3'
miRNA:   3'- cGGGC-GCGGCGG-GCGuuCCGGG----CGCU- -5'
23252 5' -66.6 NC_005259.1 + 62940 0.69 0.16208
Target:  5'- gGCUCGCGCUG-CUGCcGGGCaCCGCu- -3'
miRNA:   3'- -CGGGCGCGGCgGGCGuUCCG-GGCGcu -5'
23252 5' -66.6 NC_005259.1 + 36857 0.69 0.15808
Target:  5'- cGCCCGCugcGCCguuGCUgGCAccGCCCGCGc -3'
miRNA:   3'- -CGGGCG---CGG---CGGgCGUucCGGGCGCu -5'
23252 5' -66.6 NC_005259.1 + 62822 0.69 0.154169
Target:  5'- aGCgCCGC-UUGCCCGCGAGGUCgagcgCGCGGu -3'
miRNA:   3'- -CG-GGCGcGGCGGGCGUUCCGG-----GCGCU- -5'
23252 5' -66.6 NC_005259.1 + 56263 0.7 0.150347
Target:  5'- gGCCUugaGCGCCG-CCGCccGGCCCGUa- -3'
miRNA:   3'- -CGGG---CGCGGCgGGCGuuCCGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 37170 0.7 0.14661
Target:  5'- cGCCCGCcgaCGCCgCGCGAGGacgagCUGCGGc -3'
miRNA:   3'- -CGGGCGcg-GCGG-GCGUUCCg----GGCGCU- -5'
23252 5' -66.6 NC_005259.1 + 50105 0.7 0.14661
Target:  5'- cGCCCGagGuuGCCCGUAcgcacGGGCaCCGCc- -3'
miRNA:   3'- -CGGGCg-CggCGGGCGU-----UCCG-GGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.