miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23252 5' -66.6 NC_005259.1 + 15744 0.69 0.174632
Target:  5'- uUCCuCGCCGCCUaCGAGGCCgGgGAg -3'
miRNA:   3'- cGGGcGCGGCGGGcGUUCCGGgCgCU- -5'
23252 5' -66.6 NC_005259.1 + 16497 0.71 0.11078
Target:  5'- aCCCGCGCgcaugGCCgagaGCGAGGCgCUGCGAg -3'
miRNA:   3'- cGGGCGCGg----CGGg---CGUUCCG-GGCGCU- -5'
23252 5' -66.6 NC_005259.1 + 16565 0.66 0.26125
Target:  5'- uCCCGCccaccgggcagaucGCCgaggacaucGCCCGCGAGGCCauCGGa -3'
miRNA:   3'- cGGGCG--------------CGG---------CGGGCGUUCCGGgcGCU- -5'
23252 5' -66.6 NC_005259.1 + 17754 0.66 0.251035
Target:  5'- aUCCGUgagGCCGCCgCGCGccGGGCCgaGCGc -3'
miRNA:   3'- cGGGCG---CGGCGG-GCGU--UCCGGg-CGCu -5'
23252 5' -66.6 NC_005259.1 + 20846 0.66 0.251035
Target:  5'- aGUCCGa--CGCCUGCAAGGUguucgaCGCGAu -3'
miRNA:   3'- -CGGGCgcgGCGGGCGUUCCGg-----GCGCU- -5'
23252 5' -66.6 NC_005259.1 + 21441 0.68 0.207328
Target:  5'- gGCgUGCacauggagaacGCUGCCCGUGAGGCuuugaagccgauCCGCGAa -3'
miRNA:   3'- -CGgGCG-----------CGGCGGGCGUUCCG------------GGCGCU- -5'
23252 5' -66.6 NC_005259.1 + 22469 0.67 0.239442
Target:  5'- cGCCCGCGCgGUCUGacc-GUCCGCa- -3'
miRNA:   3'- -CGGGCGCGgCGGGCguucCGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 23348 0.72 0.094864
Target:  5'- gGCUCGagGCUGCCUGCGAGGCCgC-CGAg -3'
miRNA:   3'- -CGGGCg-CGGCGGGCGUUCCGG-GcGCU- -5'
23252 5' -66.6 NC_005259.1 + 23887 0.68 0.21241
Target:  5'- aUCCGCuGCCGCCCGagccgccGcGCCCGCc- -3'
miRNA:   3'- cGGGCG-CGGCGGGCguu----C-CGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 24849 0.69 0.179006
Target:  5'- aGUCCGUG-CGCUaCGcCGAGGCCCGCc- -3'
miRNA:   3'- -CGGGCGCgGCGG-GC-GUUCCGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 25089 0.66 0.275606
Target:  5'- cGCCgcUGCGcCCGCCCcgaGCAAGGgcaaggucgacCCCGCcGAc -3'
miRNA:   3'- -CGG--GCGC-GGCGGG---CGUUCC-----------GGGCG-CU- -5'
23252 5' -66.6 NC_005259.1 + 25948 0.73 0.081129
Target:  5'- cGCCgGUGCCcgGCCCGcCGAcGCCUGCGAu -3'
miRNA:   3'- -CGGgCGCGG--CGGGC-GUUcCGGGCGCU- -5'
23252 5' -66.6 NC_005259.1 + 27498 0.67 0.239442
Target:  5'- cGCCCcacGCGCCgaggucgacguGUCCGCAcacgccgucgAGGCCCcacgGCGGg -3'
miRNA:   3'- -CGGG---CGCGG-----------CGGGCGU----------UCCGGG----CGCU- -5'
23252 5' -66.6 NC_005259.1 + 27741 0.72 0.107963
Target:  5'- cGCCCGCuGCUGCCCacgguGCAucGCCCucgGCGAc -3'
miRNA:   3'- -CGGGCG-CGGCGGG-----CGUucCGGG---CGCU- -5'
23252 5' -66.6 NC_005259.1 + 28971 0.72 0.102531
Target:  5'- gGUCgGUGCCGaggCCGCGAGcGCCCGCu- -3'
miRNA:   3'- -CGGgCGCGGCg--GGCGUUC-CGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 30172 0.71 0.120877
Target:  5'- aGgCCGCcacaGCCGCCCGCAcagcacuaccccgucGGuGCCCGCc- -3'
miRNA:   3'- -CgGGCG----CGGCGGGCGU---------------UC-CGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 33101 0.8 0.025816
Target:  5'- gGCCCGCGagcgUGCCUGUAGGGCCaCGCGGc -3'
miRNA:   3'- -CGGGCGCg---GCGGGCGUUCCGG-GCGCU- -5'
23252 5' -66.6 NC_005259.1 + 34669 0.67 0.239442
Target:  5'- cGUCUGaggGuuGCCCGCAuuGGCgCUGCGGa -3'
miRNA:   3'- -CGGGCg--CggCGGGCGUu-CCG-GGCGCU- -5'
23252 5' -66.6 NC_005259.1 + 35087 0.69 0.172055
Target:  5'- gGCCugCGCaguccacaagcaguuGCCGCCCGUu-GGCCCgGCGGu -3'
miRNA:   3'- -CGG--GCG---------------CGGCGGGCGuuCCGGG-CGCU- -5'
23252 5' -66.6 NC_005259.1 + 35199 0.71 0.12592
Target:  5'- aGCaCCGUGCCGCCUgaggcgGCGAGGaaCGUGAc -3'
miRNA:   3'- -CG-GGCGCGGCGGG------CGUUCCggGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.