miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23252 5' -66.6 NC_005259.1 + 1374 0.97 0.001195
Target:  5'- -gCCGCGCCGCCCGCGAGGCCCGCGc -3'
miRNA:   3'- cgGGCGCGGCGGGCGUUCCGGGCGCu -5'
23252 5' -66.6 NC_005259.1 + 3283 0.69 0.16208
Target:  5'- uCCCGuCGCCGCCuCGCc-GGUCCcucgGCGAg -3'
miRNA:   3'- cGGGC-GCGGCGG-GCGuuCCGGG----CGCU- -5'
23252 5' -66.6 NC_005259.1 + 3610 0.66 0.263088
Target:  5'- uCCUGCggGCCuaCCGCAAcGGCUCGCuGAg -3'
miRNA:   3'- cGGGCG--CGGcgGGCGUU-CCGGGCG-CU- -5'
23252 5' -66.6 NC_005259.1 + 4278 0.67 0.228299
Target:  5'- cGgCUGCGCUGCCacgaGCAcggaccggcGGCCCuGCGAu -3'
miRNA:   3'- -CgGGCGCGGCGGg---CGUu--------CCGGG-CGCU- -5'
23252 5' -66.6 NC_005259.1 + 4431 0.68 0.207328
Target:  5'- cGCCCGaggucgaGCCGCCCGUGcgaguGGGCa-GCGu -3'
miRNA:   3'- -CGGGCg------CGGCGGGCGU-----UCCGggCGCu -5'
23252 5' -66.6 NC_005259.1 + 4719 0.73 0.080917
Target:  5'- -aCCGCGCCcgagaaaGCCCGCAAGGaCCgGCu- -3'
miRNA:   3'- cgGGCGCGG-------CGGGCGUUCC-GGgCGcu -5'
23252 5' -66.6 NC_005259.1 + 5412 0.74 0.07305
Target:  5'- aCCCGCGCUGgCCGCcacgucGAGGUCUGCGc -3'
miRNA:   3'- cGGGCGCGGCgGGCG------UUCCGGGCGCu -5'
23252 5' -66.6 NC_005259.1 + 5441 0.66 0.264935
Target:  5'- nGCCCGCuGCCGCCgacagauCGCAugagcagcaccaauGGCCgGUGc -3'
miRNA:   3'- -CGGGCG-CGGCGG-------GCGUu-------------CCGGgCGCu -5'
23252 5' -66.6 NC_005259.1 + 5524 0.68 0.202352
Target:  5'- cGCCCGCaagcugugGCUGCUcuCGCccGAGGCCgCGUGGg -3'
miRNA:   3'- -CGGGCG--------CGGCGG--GCG--UUCCGG-GCGCU- -5'
23252 5' -66.6 NC_005259.1 + 5702 0.67 0.239442
Target:  5'- uGCUCGUGCCGCCa---AGGCCaGCGc -3'
miRNA:   3'- -CGGGCGCGGCGGgcguUCCGGgCGCu -5'
23252 5' -66.6 NC_005259.1 + 7417 0.69 0.16208
Target:  5'- cCUCGuCGCCGUCgGCGGuGCCCGCGc -3'
miRNA:   3'- cGGGC-GCGGCGGgCGUUcCGGGCGCu -5'
23252 5' -66.6 NC_005259.1 + 7576 0.69 0.178564
Target:  5'- cGUUCGCGCCGCcgCCGCcgaccucAAGGUCgGUGAc -3'
miRNA:   3'- -CGGGCGCGGCG--GGCG-------UUCCGGgCGCU- -5'
23252 5' -66.6 NC_005259.1 + 7859 0.68 0.21241
Target:  5'- -aCCGCGCCGaCCC-CGGuGGCCCGa-- -3'
miRNA:   3'- cgGGCGCGGC-GGGcGUU-CCGGGCgcu -5'
23252 5' -66.6 NC_005259.1 + 8881 0.66 0.251035
Target:  5'- aCCCaCGCCGCCugagcgucaCGCucGGCCUGCu- -3'
miRNA:   3'- cGGGcGCGGCGG---------GCGuuCCGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 9665 0.66 0.288596
Target:  5'- uGCCCguuguuccacauGCGCUGCCgGuCGAGGUcgCCGCu- -3'
miRNA:   3'- -CGGG------------CGCGGCGGgC-GUUCCG--GGCGcu -5'
23252 5' -66.6 NC_005259.1 + 9803 0.71 0.113665
Target:  5'- cGCUCGCGCCacuaccGCCCGCAccGCCgggUGCGGc -3'
miRNA:   3'- -CGGGCGCGG------CGGGCGUucCGG---GCGCU- -5'
23252 5' -66.6 NC_005259.1 + 10133 0.66 0.269288
Target:  5'- aGCCCacGCGCgCGCCCGCc--GUUCGCa- -3'
miRNA:   3'- -CGGG--CGCG-GCGGGCGuucCGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 10677 0.71 0.12917
Target:  5'- gGUCUGCGCCGCCUcuuugucgccguugaGCAuggacggguaguuGGCCCGCa- -3'
miRNA:   3'- -CGGGCGCGGCGGG---------------CGUu------------CCGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 13942 0.69 0.16208
Target:  5'- cGCCaaauCGaCGCCGgaccauCCCGgcauccCGAGGCCCGCGAu -3'
miRNA:   3'- -CGG----GC-GCGGC------GGGC------GUUCCGGGCGCU- -5'
23252 5' -66.6 NC_005259.1 + 14320 0.72 0.102531
Target:  5'- cGCCCucgacgcCGCCGCCCGCGugcGGgCCGCcGAc -3'
miRNA:   3'- -CGGGc------GCGGCGGGCGUu--CCgGGCG-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.