miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23252 5' -66.6 NC_005259.1 + 36626 1.09 0.000124
Target:  5'- cGCCCGCGCCGCCCGCAAGGCCCGCGAu -3'
miRNA:   3'- -CGGGCGCGGCGGGCGUUCCGGGCGCU- -5'
23252 5' -66.6 NC_005259.1 + 1374 0.97 0.001195
Target:  5'- -gCCGCGCCGCCCGCGAGGCCCGCGc -3'
miRNA:   3'- cgGGCGCGGCGGGCGUUCCGGGCGCu -5'
23252 5' -66.6 NC_005259.1 + 33101 0.8 0.025816
Target:  5'- gGCCCGCGagcgUGCCUGUAGGGCCaCGCGGc -3'
miRNA:   3'- -CGGGCGCg---GCGGGCGUUCCGG-GCGCU- -5'
23252 5' -66.6 NC_005259.1 + 57175 0.77 0.044151
Target:  5'- cGUCCuCGCCGCCguaGUucGGCCCGCGAa -3'
miRNA:   3'- -CGGGcGCGGCGGg--CGuuCCGGGCGCU- -5'
23252 5' -66.6 NC_005259.1 + 44669 0.76 0.04732
Target:  5'- cGCCacaccguugggcaGCGUgGCCCGCAuauGGCCCGCGu -3'
miRNA:   3'- -CGGg------------CGCGgCGGGCGUu--CCGGGCGCu -5'
23252 5' -66.6 NC_005259.1 + 47969 0.75 0.057605
Target:  5'- -gCCGCGCCGCCCGCGaauaugccGGGCagCGCa- -3'
miRNA:   3'- cgGGCGCGGCGGGCGU--------UCCGg-GCGcu -5'
23252 5' -66.6 NC_005259.1 + 5412 0.74 0.07305
Target:  5'- aCCCGCGCUGgCCGCcacgucGAGGUCUGCGc -3'
miRNA:   3'- cGGGCGCGGCgGGCG------UUCCGGGCGCu -5'
23252 5' -66.6 NC_005259.1 + 44241 0.74 0.074995
Target:  5'- -gCCGCGCCGCCCGCGcgcgAGaaGUCgGCGAc -3'
miRNA:   3'- cgGGCGCGGCGGGCGU----UC--CGGgCGCU- -5'
23252 5' -66.6 NC_005259.1 + 46884 0.74 0.076988
Target:  5'- cGCgC-CGCCGCCCGCGaugAGcGCCCGcCGAg -3'
miRNA:   3'- -CGgGcGCGGCGGGCGU---UC-CGGGC-GCU- -5'
23252 5' -66.6 NC_005259.1 + 4719 0.73 0.080917
Target:  5'- -aCCGCGCCcgagaaaGCCCGCAAGGaCCgGCu- -3'
miRNA:   3'- cgGGCGCGG-------CGGGCGUUCC-GGgCGcu -5'
23252 5' -66.6 NC_005259.1 + 25948 0.73 0.081129
Target:  5'- cGCCgGUGCCcgGCCCGcCGAcGCCUGCGAu -3'
miRNA:   3'- -CGGgCGCGG--CGGGC-GUUcCGGGCGCU- -5'
23252 5' -66.6 NC_005259.1 + 45340 0.73 0.085482
Target:  5'- gGCCUGCGCCGCCU---GGGCCgcCGCGu -3'
miRNA:   3'- -CGGGCGCGGCGGGcguUCCGG--GCGCu -5'
23252 5' -66.6 NC_005259.1 + 23348 0.72 0.094864
Target:  5'- gGCUCGagGCUGCCUGCGAGGCCgC-CGAg -3'
miRNA:   3'- -CGGGCg-CGGCGGGCGUUCCGG-GcGCU- -5'
23252 5' -66.6 NC_005259.1 + 45669 0.72 0.094864
Target:  5'- cGUCCGCGuaguaCCGCCUGCucAGGCCCuuacggaaccGCGAg -3'
miRNA:   3'- -CGGGCGC-----GGCGGGCGu-UCCGGG----------CGCU- -5'
23252 5' -66.6 NC_005259.1 + 53215 0.72 0.097357
Target:  5'- aUUCGCGUCGCCCGCGcccugcuugAGGUUCGCGc -3'
miRNA:   3'- cGGGCGCGGCGGGCGU---------UCCGGGCGCu -5'
23252 5' -66.6 NC_005259.1 + 14320 0.72 0.102531
Target:  5'- cGCCCucgacgcCGCCGCCCGCGugcGGgCCGCcGAc -3'
miRNA:   3'- -CGGGc------GCGGCGGGCGUu--CCgGGCG-CU- -5'
23252 5' -66.6 NC_005259.1 + 45018 0.72 0.102531
Target:  5'- gGgCCGCGCCGCCCuGCuucauGAGcuGCUCGCGGu -3'
miRNA:   3'- -CgGGCGCGGCGGG-CG-----UUC--CGGGCGCU- -5'
23252 5' -66.6 NC_005259.1 + 28971 0.72 0.102531
Target:  5'- gGUCgGUGCCGaggCCGCGAGcGCCCGCu- -3'
miRNA:   3'- -CGGgCGCGGCg--GGCGUUC-CGGGCGcu -5'
23252 5' -66.6 NC_005259.1 + 27741 0.72 0.107963
Target:  5'- cGCCCGCuGCUGCCCacgguGCAucGCCCucgGCGAc -3'
miRNA:   3'- -CGGGCG-CGGCGGG-----CGUucCGGG---CGCU- -5'
23252 5' -66.6 NC_005259.1 + 37582 0.72 0.107963
Target:  5'- cGCCCGCGCCGaUCUGCAagcugaacgucGGGCCgaGCu- -3'
miRNA:   3'- -CGGGCGCGGC-GGGCGU-----------UCCGGg-CGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.