Results 41 - 60 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23254 | 3' | -59.6 | NC_005259.1 | + | 3868 | 0.67 | 0.476769 |
Target: 5'- gUCGAGCGCCUcGaGCCcaccccgcAGCGCGAcaucGuCGCc -3' miRNA: 3'- -GGCUCGUGGAaC-CGG--------UCGCGCU----C-GCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 44024 | 0.68 | 0.461417 |
Target: 5'- uUCGAGCgcggacugaacaccgGCCUUGacgaCCGGCuCGAGUGCg -3' miRNA: 3'- -GGCUCG---------------UGGAACc---GGUCGcGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 33913 | 0.68 | 0.45762 |
Target: 5'- gCCGAG-ACC--GGCCacGGUGCGAGCa- -3' miRNA: 3'- -GGCUCgUGGaaCCGG--UCGCGCUCGcg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 52141 | 0.68 | 0.45762 |
Target: 5'- uCCG-GCACCUcgccgaGGCaggCAGCGCcGAGgCGCu -3' miRNA: 3'- -GGCuCGUGGAa-----CCG---GUCGCG-CUC-GCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 23284 | 0.68 | 0.454783 |
Target: 5'- aCCGGGCGCggUGGuuggguaucgggguCCGGCGCGgucGGUGUc -3' miRNA: 3'- -GGCUCGUGgaACC--------------GGUCGCGC---UCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 36004 | 0.68 | 0.451956 |
Target: 5'- gCCGGacuGCACCgaggUGGCCAGCGaggucgacaUGAucagcgaggccacccGCGCg -3' miRNA: 3'- -GGCU---CGUGGa---ACCGGUCGC---------GCU---------------CGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 14142 | 0.68 | 0.448202 |
Target: 5'- aCGAGUGCCUguGCgAGCGCGucGUGUg -3' miRNA: 3'- gGCUCGUGGAacCGgUCGCGCu-CGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 21230 | 0.68 | 0.448202 |
Target: 5'- gCCGAGUacGCCUcGGCagcGCGCGGGUu- -3' miRNA: 3'- -GGCUCG--UGGAaCCGgu-CGCGCUCGcg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 64917 | 0.68 | 0.448202 |
Target: 5'- gCGAGCGugaggaugaCgaGuGCCAGCGCGAGgGUg -3' miRNA: 3'- gGCUCGUg--------GaaC-CGGUCGCGCUCgCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 26502 | 0.68 | 0.438891 |
Target: 5'- gCGAGCucGCCgc--CCGGCGagaaGAGCGCg -3' miRNA: 3'- gGCUCG--UGGaaccGGUCGCg---CUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 32448 | 0.68 | 0.43612 |
Target: 5'- -aGGGUccaucAUCUUGGCCAGCagaguuucguacucGcCGGGCGCg -3' miRNA: 3'- ggCUCG-----UGGAACCGGUCG--------------C-GCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 45165 | 0.68 | 0.429692 |
Target: 5'- ---cGC-CCUUGGCCuuguuGCGCGccgaggucAGCGCg -3' miRNA: 3'- ggcuCGuGGAACCGGu----CGCGC--------UCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 51775 | 0.68 | 0.429692 |
Target: 5'- gCGAGCGCCUUgaGGUauuCGGCGCucGGCGg -3' miRNA: 3'- gGCUCGUGGAA--CCG---GUCGCGc-UCGCg -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 32529 | 0.68 | 0.429692 |
Target: 5'- gCGGGCggcaggcuugACCUugcuguUGGCC-GCcccgGCGAGCGCg -3' miRNA: 3'- gGCUCG----------UGGA------ACCGGuCG----CGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 47858 | 0.68 | 0.420608 |
Target: 5'- uUCGAGCGCCUuguUGGCCucuuccagcuuGGC-CGGGUcaGCg -3' miRNA: 3'- -GGCUCGUGGA---ACCGG-----------UCGcGCUCG--CG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 54226 | 0.69 | 0.402792 |
Target: 5'- aCCGGGCAUag-GGUCGGUccuccuaaGuCGGGCGCg -3' miRNA: 3'- -GGCUCGUGgaaCCGGUCG--------C-GCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 17847 | 0.69 | 0.402792 |
Target: 5'- gCCGAGgcCACCccgUGGUCAGCGauccuuGAGcCGCu -3' miRNA: 3'- -GGCUC--GUGGa--ACCGGUCGCg-----CUC-GCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 32908 | 0.69 | 0.402792 |
Target: 5'- gUGAGcCACCc-GGCCcGCuCGGGCGCg -3' miRNA: 3'- gGCUC-GUGGaaCCGGuCGcGCUCGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 18321 | 0.69 | 0.402792 |
Target: 5'- gCGA-CACCgaGGCCGGUGCGuuCGUg -3' miRNA: 3'- gGCUcGUGGaaCCGGUCGCGCucGCG- -5' |
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23254 | 3' | -59.6 | NC_005259.1 | + | 15570 | 0.69 | 0.402792 |
Target: 5'- gUGGcCACCcucggGGCCAGCGCGAcGgGCc -3' miRNA: 3'- gGCUcGUGGaa---CCGGUCGCGCU-CgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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