miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23255 5' -54.9 NC_005259.1 + 49634 0.68 0.680956
Target:  5'- cGG-CGGCAgccgcGUCGGCGAuGGCgGCCUc -3'
miRNA:   3'- -CCaGCUGUac---UAGUCGCU-CCGgUGGG- -5'
23255 5' -54.9 NC_005259.1 + 67732 0.68 0.680956
Target:  5'- -cUCGAUccGAUacCGGCGgccacuAGGCCGCCCc -3'
miRNA:   3'- ccAGCUGuaCUA--GUCGC------UCCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 35674 0.68 0.680956
Target:  5'- cGGUgGugGUGcaCAGCGAcGCCguGCCCg -3'
miRNA:   3'- -CCAgCugUACuaGUCGCUcCGG--UGGG- -5'
23255 5' -54.9 NC_005259.1 + 66490 0.68 0.67989
Target:  5'- -cUCGAuCAUGGgauuuccuuccugUCGGCGGGGCgGuCCCg -3'
miRNA:   3'- ccAGCU-GUACU-------------AGUCGCUCCGgU-GGG- -5'
23255 5' -54.9 NC_005259.1 + 27459 0.69 0.671344
Target:  5'- cGUCGcGCGggaaauuggggccggGGUCGGUGuGGCCACCg -3'
miRNA:   3'- cCAGC-UGUa--------------CUAGUCGCuCCGGUGGg -5'
23255 5' -54.9 NC_005259.1 + 27512 0.69 0.670274
Target:  5'- aGGUCGACGUGuccgCAcacgccGuCGAGGCC-CCa -3'
miRNA:   3'- -CCAGCUGUACua--GU------C-GCUCCGGuGGg -5'
23255 5' -54.9 NC_005259.1 + 58278 0.69 0.670274
Target:  5'- --cCGACA-GAUCAgguucGCGAGGCCAgCg -3'
miRNA:   3'- ccaGCUGUaCUAGU-----CGCUCCGGUgGg -5'
23255 5' -54.9 NC_005259.1 + 45904 0.69 0.670274
Target:  5'- cGGUCGGCGggcaccgcUGGUagacCGAGGCUcuGCCCg -3'
miRNA:   3'- -CCAGCUGU--------ACUAguc-GCUCCGG--UGGG- -5'
23255 5' -54.9 NC_005259.1 + 29582 0.69 0.659558
Target:  5'- aGGUCGAUAaGGUCAuuGcCGAGGCaauugCAUCCg -3'
miRNA:   3'- -CCAGCUGUaCUAGU--C-GCUCCG-----GUGGG- -5'
23255 5' -54.9 NC_005259.1 + 46868 0.69 0.648817
Target:  5'- cGGUCGAgGcuUGaAUC-GCGccGCCGCCCg -3'
miRNA:   3'- -CCAGCUgU--AC-UAGuCGCucCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 14277 0.69 0.647742
Target:  5'- cGUCGACAccgccUGcccaaccaccgauGUCGGUGcguauGGCCGCCCu -3'
miRNA:   3'- cCAGCUGU-----AC-------------UAGUCGCu----CCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 43060 0.69 0.638062
Target:  5'- --cCGACggGGUCGGUGAGGaacgcgaGCCCg -3'
miRNA:   3'- ccaGCUGuaCUAGUCGCUCCgg-----UGGG- -5'
23255 5' -54.9 NC_005259.1 + 101 0.69 0.638062
Target:  5'- gGGUCaGACAUGAccgaUCAGCucaccaucaucGAGGCCaacggcaagACCUa -3'
miRNA:   3'- -CCAG-CUGUACU----AGUCG-----------CUCCGG---------UGGG- -5'
23255 5' -54.9 NC_005259.1 + 22590 0.69 0.638062
Target:  5'- uGGUCGACGcGAUCAagcugcacgccGcCGAccGCCGCCCg -3'
miRNA:   3'- -CCAGCUGUaCUAGU-----------C-GCUc-CGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 61009 0.69 0.628377
Target:  5'- cGUCGACgGUGAgcuuccacucgguggCGGCGAGGUCgACCg -3'
miRNA:   3'- cCAGCUG-UACUa--------------GUCGCUCCGG-UGGg -5'
23255 5' -54.9 NC_005259.1 + 42449 0.69 0.616545
Target:  5'- -uUCGGCGUccaacagucgccGAcuaCGGCGAGGCCcgGCCCg -3'
miRNA:   3'- ccAGCUGUA------------CUa--GUCGCUCCGG--UGGG- -5'
23255 5' -54.9 NC_005259.1 + 25139 0.7 0.59508
Target:  5'- --cCGACGUGAccaacgUCGGUGAGGacaaGCCCg -3'
miRNA:   3'- ccaGCUGUACU------AGUCGCUCCgg--UGGG- -5'
23255 5' -54.9 NC_005259.1 + 47632 0.7 0.573735
Target:  5'- cGUCGcCGaGggCAGCGAGGCC-CUCu -3'
miRNA:   3'- cCAGCuGUaCuaGUCGCUCCGGuGGG- -5'
23255 5' -54.9 NC_005259.1 + 6617 0.7 0.573735
Target:  5'- cGUCGAuCAaGAUugcCAGCGGGuCCGCCCg -3'
miRNA:   3'- cCAGCU-GUaCUA---GUCGCUCcGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 38219 0.7 0.564185
Target:  5'- -aUCGACAgcgagaaguagcgugGAUCAGCGAugGuGCCGCCUu -3'
miRNA:   3'- ccAGCUGUa--------------CUAGUCGCU--C-CGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.